RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 DSC1Q08554 894 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ELAVL2Q12926 359 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ABRQ12979 859 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 GPR17Q13304 367 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 DOC2AQ14183 400 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ARHGEF6Q15052 776 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SLC5A12Q1EHB4 618 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 TIMM50Q3ZCQ8 353 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SYTL3Q4VX76 610 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 IFI44LQ53G44 452 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ADGRF1Q5T601 910 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CXorf57Q6NSI4 855 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 NCEH1Q6PIU2 408 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 IL20RBQ6UXL0 311 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ASB18Q6ZVZ8 466 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 USP30Q70CQ3 517 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 UBE2R2Q712K3 238 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 MRPL10Q7Z7H8 261 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SLC51BQ86UW2 128 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF366Q8N895 744 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SLC37A3Q8NCC5 494 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 DNAJB8Q8NHS0 232 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 LRRC20Q8TCA0 184 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 MRPS31Q92665 395 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 C1GALT1C1Q96EU7 318 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SOSTQ9BQB4 213 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 C2orf49Q9BVC5 232 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 TSSK6Q9BXA6 273 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 MVB12BQ9H7P6 319 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CLN6Q9NWW5 311 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CNOT2Q9NZN8 540 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 KCMF1Q9P0J7 381 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 LHX3Q9UBR4 397 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SF3B6Q9Y3B4 125 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 Q9Y3F1 56 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 DOCK6Q96HP0 2047 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 DSPPQ9NZW4 1301 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 PLXNA3P51805 1871 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 GLYATL1P3A0A0U1RQE8 302 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 C2orf92A0A1B0GVN3 265 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 FAM240BA0A1B0GVZ2 78 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 OR5K3A6NET4 321 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM202A6NGA9 273 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TEX46H3BTG2 121 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SYN3O14994 580 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SCAMP2O15127 329 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TLX2O43763 284 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 FZD6O60353 706 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SLC22A5O76082 557 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 EOMESO95936 686 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 URODP06132 367 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ANXA5P08758 320 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ATF4P18848 351 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TNNI3P19429 210 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CTGFP29279 349 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 HNF1BP35680 557 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 NUDT1P36639 197 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SRP9P49458 86 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 STK19P49842 368 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 VASPP50552 380 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CLDN20P56880 219 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 EEF1A2Q05639 463 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SCARB2Q14108 478 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 IL18Q14116 193 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CDKN3Q16667 212 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CRB2Q5IJ48 1285 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 BCL2L15Q5TBC7 163 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ANKRD54Q6NXT1 300 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TEX261Q6UWH6 196 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 RNF165Q6ZSG1 346 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 DDX53Q86TM3 631 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 KRT73Q86Y46 540 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 RBFAQ8N0V3 343 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 C2orf73Q8N5S3 287 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 LILRA3Q8N6C8 439 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 C11orf65Q8NCR3 313 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 OR4A15Q8NGL6 344 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 HSD17B8Q92506 261 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM80Q96HE8 168 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 PIP5K1AQ99755 562 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 MARVELD1Q9BSK0 173 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SPATA9Q9BWV2 254 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 GTPBP2Q9BX10 602 aaKnown RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 NIPAL2Q9H841 368 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 C1GALT1Q9NS00 363 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM161AQ9NX61 479 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TVP23BQ9NYZ1 205 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SEC14L4Q9UDX3 406 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 ELF5Q9UKW6 265 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-214ENST00000552783 MGAT4AQ9UM21 535 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SSR3Q9UNL2 185 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 GPR52Q9Y2T5 361 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 CDH10Q9Y6N8 788 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 U3KQ87 197 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 SCN8AQ9UQD0 1980 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TRAV6A0A075B6T7 132 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TRBC2A0A5B9 178 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 H3BN98 237 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 TSPAN4O14817 238 aa4.61□□□□□ -1.67
LIMA1-214ENST00000552783 NUPL2O15504 423 aaKnown RBP4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms