RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 OR6Q1Q8NGQ2 317 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 IPCEF1Q8WWN9 437 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 RASSF5Q8WWW0 418 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 KIAA1191Q96A73 305 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 MEGF10Q96KG7 1140 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 COL21A1Q96P44 957 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 RHNO1Q9BSD3 238 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 C1QTNF1Q9BXJ1 281 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF700Q9H0M5 742 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 OR51V1Q9H2C8 321 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 ZDHHC6Q9H6R6 413 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 TPT1P8Q9HAU6 139 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 SDR39U1Q9NRG7 319 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 TMEM30AQ9NV96 361 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 AIG1Q9NVV5 245 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 CLDND1Q9NY35 253 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 ENOPH1Q9UHY7 261 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 LSM7Q9UK45 103 aaKnown RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 ANGPT4Q9Y264 503 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 ANKRD36A6QL64 1941 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 C2orf92A0A1B0GVN3 265 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 IRAK2O43187 625 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 NME6O75414 186 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 KHDRBS3O75525 346 aaKnown RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 SCO1O75880 301 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 CCNDBP1O95273 360 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 CHRNB1P11230 501 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 PRKACAP17612 351 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 CELP19835 753 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 CD72P21854 359 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 SOX3P41225 446 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 LEPRP48357 1165 aaKnown RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 INCA1Q0VD86 236 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 HSPB3Q12988 150 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 BRMS1LQ5PSV4 323 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 LCE2AQ5TA79 106 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 FBXL22Q6P050 247 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF765Q7L2R6 523 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 SHFQ7M4L6 423 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 LHFPL3Q86UP9 236 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 MON1AQ86VX9 555 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 MARCH9Q86YJ5 346 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 RBFAQ8N0V3 343 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 PARP16Q8N5Y8 322 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF655Q8N720 491 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 FCGR1BQ92637 280 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 EXOSC8Q96B26 276 aaKnown RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 GPR78Q96P69 363 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 FYTTD1Q96QD9 318 aaKnown RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 MROQ9BYG7 248 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-203ENST00000547825 RHBGQ9H310 441 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 MFSD1Q9H3U5 465 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 ZMAT4Q9H898 229 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 CPNE5Q9HCH3 593 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 NECTIN3Q9NQS3 549 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 GKN1Q9NS71 199 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 GPATCH2Q9NW75 528 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 UTS2RQ9UKP6 389 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 AP3M1Q9Y2T2 418 aa5.24□□□□□ -1.57
LIMA1-203ENST00000547825 FAM186AA6NE01 2351 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 A0A0D9SEW6 157 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 TMEM82A0PJX8 343 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 EPOPA6NHQ4 379 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 AGAP5A6NIR3 686 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 ZNF701M0R085 212 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-203ENST00000547825 KPNA3O00505 521 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-203ENST00000547825 SCDO00767 359 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 UBFD1O14562 309 aaKnown RBP5.23□□□□□ -1.57
LIMA1-203ENST00000547825 TBL1XO60907 577 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 GJB3O75712 270 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 TGFB1P01137 390 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 STATHP02808 62 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 S100A9P06702 114 aaKnown RBP5.23□□□□□ -1.57
LIMA1-203ENST00000547825 SRFP11831 508 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 GKP32189 559 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 KDELR2P33947 212 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 PBX3P40426 434 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 CASP3P42574 277 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 KCNQ1P51787 676 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 CAV3P56539 151 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 ERVPABLB-1P60509 514 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 MVKQ03426 396 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 PUDPQ08623 228 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 PLD1Q13393 1074 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 IHHQ14623 411 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 IFI44LQ53G44 452 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 PYCR3Q53H96 274 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 TOR1AIP1Q5JTV8 583 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 AGAP6Q5VW22 663 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 ADGRD2Q7Z7M1 963 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 MEX3DQ86XN8 651 aaKnown RBP5.23□□□□□ -1.57
LIMA1-203ENST00000547825 NLGN4XQ8N0W4 816 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 Q8N402 240 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 RAD51AP1Q96B01 352 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 C12orf66Q96MD2 445 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 KCTD7Q96MP8 289 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 AGAP4Q96P64 663 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 SLX1AQ9BQ83 275 aa5.23□□□□□ -1.57
LIMA1-203ENST00000547825 INPP5KQ9BT40 448 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms