RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 LRRTM4Q86VH4 590 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 RAB43Q86YS6 212 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 NKAPQ8N5F7 415 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CELF5Q8N6W0 485 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF557Q8N988 423 aaPredicted RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CEP76Q8TAP6 659 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SETD7Q8WTS6 366 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SORCS1Q8WY21 1168 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 NSUN5Q96P11 429 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 TEX12Q9BXU0 123 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 MMP27Q9H306 513 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 ZDHHC6Q9H6R6 413 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CHMP1AQ9HD42 196 aaPredicted RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 OSGIN1Q9UJX0 560 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 BTRCQ9Y297 605 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 KIAA1549LQ6ZVL6 1849 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PLXNA2O75051 1894 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 GLYATL1P3A0A0U1RQE8 302 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 A0A1B0GTL3 188 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 A0A1B0GV90 55 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 OR6C70A6NIJ9 312 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 LOC110117498-PIK3R3F6TDL0 507 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 ARHGEF9O43307 516 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 RECQL5O94762 991 aaPredicted RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CDK1P06493 297 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CTSLP07711 333 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 UMPSP11172 480 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PTAFRP25105 342 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SPAM1P38567 509 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PBX2P40425 430 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 EIF2S3P41091 472 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 IL12RB1P42701 662 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 EIF1AXP47813 144 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SH3BP2P78314 561 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 MESP2Q0VG99 397 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SLAMF1Q13291 335 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CDK5R2Q13319 367 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF267Q14586 743 aaPredicted RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SHHQ15465 462 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SMN1Q16637 294 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 AAK1Q2M2I8 961 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 FAM98BQ52LJ0 330 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 SOWAHCQ53LP3 525 aaPredicted RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 YIF1BQ5BJH7 314 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 ZMAT1Q5H9K5 638 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 CES5AQ6NT32 575 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 RFLNAQ6ZTI6 216 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 LARP4Q71RC2 724 aaKnown RBP eCLIP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 GALNTL5Q7Z4T8 443 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 AMIGO1Q86WK6 493 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 ETFBKMTQ8IXQ9 262 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 RYBPQ8N488 228 aaPredicted RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 STAG3L4Q8TBR4 150 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 KLHL6Q8WZ60 621 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 UFD1Q92890 307 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PTP4A1Q93096 173 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PDXPQ96GD0 296 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PDLIM5Q96HC4 596 aaKnown RBP7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 ROGDIQ9GZN7 287 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 MMP28Q9H239 520 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 RNF167Q9H6Y7 350 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 ZNF639Q9UID6 485 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 TMPRSS11EQ9UL52 423 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 KLHL20Q9Y2M5 609 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 DHRS7Q9Y394 339 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PCDHB1Q9Y5F3 818 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 PCDHA9Q9Y5H5 950 aa7.63□□□□□ -1.19
PDLIM5-221ENST00000542407 TRBV23-1A0A0A0MS06 115 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 EPOPA6NHQ4 379 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 UPK1AO00322 258 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 BCKDKO14874 412 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 LINC00032P0C843 101 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 HGFP14210 728 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 HRH2P25021 359 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 AZGP1P25311 298 aaKnown RBP7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 TAGLN2P37802 199 aaKnown RBP7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 KCNK10P57789 538 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 ISL1P61371 349 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 B4GALNT1Q00973 533 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 C17orf67Q0P5P2 114 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 BAMBIQ13145 260 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 ACOX1Q15067 660 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 TAB1Q15750 504 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 PAGE3Q5JUK9 113 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 MSANTD1Q6ZTZ1 278 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 RABEPKQ7Z6M1 372 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 TRIM48Q8IWZ4 208 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 UBE2J2Q8N2K1 259 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 CYB5D2Q8WUJ1 264 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 LINGO1Q96FE5 620 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 UCK2Q9BZX2 261 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 RIBC2Q9H4K1 309 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 ASB8Q9H765 288 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 RASSF1Q9NS23 344 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 SCN3BQ9NY72 215 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 CDV3Q9UKY7 258 aaKnown RBP7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 ASB1Q9Y576 335 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 ORC6Q9Y5N6 252 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 IGLV3-16A0A075B6K0 115 aa7.62□□□□□ -1.19
PDLIM5-221ENST00000542407 OTOL1A6NHN0 477 aaPredicted RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms