RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CHAF1BQ13112 559 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 ELOAQ14241 798 aaKnown RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 RBBP5Q15291 538 aaKnown RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 PGS1Q32NB8 556 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 PLEKHN1Q494U1 663 aaPredicted RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 FAM98BQ52LJ0 330 aaKnown RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 DEPDC1Q5TB30 811 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 KHDRBS2Q5VWX1 349 aaKnown RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 CPZQ66K79 652 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 SPRED1Q7Z699 444 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 SERPINA11Q86U17 422 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 RETREG3Q86VR2 466 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 AMIGO1Q86WK6 493 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 NUDT13Q86X67 352 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 FAM129CQ86XR2 697 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 APLFQ8IW19 511 aaPredicted RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 RIMKLAQ8IXN7 391 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 NAGSQ8N159 534 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 LILRA3Q8N6C8 439 aaPredicted RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 ZNF655Q8N720 491 aaPredicted RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 C7orf57Q8NEG2 295 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 OR2T12Q8NG77 320 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 DNAJB14Q8TBM8 379 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 NAT14Q8WUY8 206 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 GTF2H4Q92759 462 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 PPCDCQ96CD2 204 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 COQ8BQ96D53 544 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 RNF145Q96MT1 663 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 PANX1Q96RD7 426 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 MTERF1Q99551 399 aaKnown RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 CTRCQ99895 268 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 NUDT22Q9BRQ3 303 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 SRMSQ9H3Y6 488 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 GORASP2Q9H8Y8 452 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 IL1RL2Q9HB29 575 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 MRPS30Q9NP92 439 aaKnown RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 PRDM9Q9NQV7 894 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 FARSBQ9NSD9 589 aaKnown RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 CCM2LQ9NUG4 571 aaPredicted RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 SLC39A1Q9NY26 324 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 ZNF282Q9UDV7 671 aaPredicted RBP7.92□□□□□ -1.14
CHD4-208ENST00000540960 TAC3Q9UHF0 121 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 ATP6V1HQ9UI12 483 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 OSGIN2Q9Y236 505 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 POLHQ9Y253 713 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 ZNF451Q9Y4E5 1061 aa7.92□□□□□ -1.14
CHD4-208ENST00000540960 IGHV5-10-1A0A0J9YXX1 117 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 DHRS12A0PJE2 317 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 ELOVL7A1L3X0 281 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 FAM220BPB1ANY3 271 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 FXYD1O00168 92 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 NME4O00746 187 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 TXNDC9O14530 226 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 SCAMP2O15127 329 aaKnown RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 ZW10O43264 779 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 B4GAT1O43505 415 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 VIPP01282 170 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 ABCB1P08183 1280 aaPredicted RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 CDH1P12830 882 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 ATP6V1C1P21283 382 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 FASP25445 335 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 SSTR2P30874 369 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 ACTR1BP42025 376 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 PER3P56645 1201 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 SESN3P58005 492 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 ACTR1AP61163 376 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 RPS13P62277 151 aaKnown RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 RGS1Q08116 209 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 RBBP4Q09028 425 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 FOXD4Q12950 439 aaPredicted RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 PTGR1Q14914 329 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 ELOCQ15369 112 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 SF1Q15637 639 aaKnown RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 TRIP10Q15642 601 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 CCSMST1Q4G0I0 132 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 RUNDC3AQ59EK9 446 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 SPANXN4Q5MJ08 99 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 CCNYL2Q5T2Q4 361 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 INTS11Q5TA45 600 aaKnown RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 ARMC6Q6NXE6 501 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 TRIM40Q6P9F5 258 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 BHLHB9Q6PI77 547 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 SLC2A7Q6PXP3 512 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 DLEU7Q6UYE1 221 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 SLC9B2Q86UD5 537 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 FJX1Q86VR8 437 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 OOSP2Q86WS3 158 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 C1orf52Q8N6N3 182 aaKnown RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 LMNTD1Q8N9Z9 388 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 ZFP28Q8NHY6 868 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 PYDC1Q8WXC3 89 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 PPWD1Q96BP3 646 aaKnown RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 FAM120BQ96EK7 910 aaKnown RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 C11orf24Q96F05 449 aaPredicted RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 APIPQ96GX9 242 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 REXO5Q96IC2 774 aaKnown RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 CCDC74BQ96LY2 380 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 TSSK3Q96PN8 268 aa7.91□□□□□ -1.14
CHD4-208ENST00000540960 NR1H4Q96RI1 486 aaPredicted RBP7.91□□□□□ -1.14
CHD4-208ENST00000540960 HBEGFQ99075 208 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms