RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SOD3P08294 240 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TCP1P17987 556 aaKnown RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 RBL1P28749 1068 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 CCKARP32238 428 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 RPS6KA1Q15418 735 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 KBTBD12Q3ZCT8 623 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 ZNF474Q6S9Z5 364 aaPredicted RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 SHISA2Q6UWI4 295 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 MFSD7Q6UXD7 560 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 ZNF572Q7Z3I7 529 aaPredicted RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 CCDC50Q8IVM0 306 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 SCUBE1Q8IWY4 988 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 FAM168AQ92567 244 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TP53INP1Q96A56 240 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 HAUS1Q96CS2 278 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 STARD4Q96DR4 205 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 NTMT1Q9BV86 223 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 OPN3Q9H1Y3 402 aaPredicted RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 ANKZF1Q9H8Y5 726 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 NGBQ9NPG2 151 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 CATSPERZQ9NTU4 200 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP28-205ENST00000537706 RAB21Q9UL25 225 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 R3HDM2Q9Y2K5 976 aaKnown RBP8.33□□□□□ -1.08
USP28-205ENST00000537706 HYOU1Q9Y4L1 999 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 SNX8Q9Y5X2 465 aa8.33□□□□□ -1.08
USP28-205ENST00000537706 TGFBR3LH3BV60 316 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 CLOCKO15516 846 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 OR1F1O43749 312 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 ZBTB14O43829 449 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 TRIM3O75382 744 aaPredicted RBP8.32□□□□□ -1.08
USP28-205ENST00000537706 ALDOAP04075 364 aaKnown RBP8.32□□□□□ -1.08
USP28-205ENST00000537706 CD3EP07766 207 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 RPS3P23396 243 aaKnown RBP eCLIP8.32□□□□□ -1.08
USP28-205ENST00000537706 MSH2P43246 934 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 EIPR1Q53HC9 387 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 ALKBH5Q6P6C2 394 aaKnown RBP8.32□□□□□ -1.08
USP28-205ENST00000537706 CILP2Q8IUL8 1156 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 ZNF595Q8IYB9 648 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 CA13Q8N1Q1 262 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 NUBPLQ8TB37 319 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 NT5CQ8TCD5 201 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 DIO2Q92813 273 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 FAR2Q96K12 515 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 RBM4Q9BWF3 364 aaKnown RBP8.32□□□□□ -1.08
USP28-205ENST00000537706 PARD6BQ9BYG5 372 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 CLCF1Q9UBD9 225 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 METRNQ9UJH8 293 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 GDF2Q9UK05 429 aaPredicted RBP8.32□□□□□ -1.08
USP28-205ENST00000537706 RIMKLBQ9ULI2 386 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 PROCRQ9UNN8 238 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 C15orf41Q9Y2V0 281 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 DYSFO75923 2080 aa8.32□□□□□ -1.08
USP28-205ENST00000537706 A0A088AWK7 358 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 ANKRD33BA6NCL7 494 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 TRIM77I1YAP6 450 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 ATP8B1O43520 1251 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 LCMT2O60294 686 aaKnown RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 CDH16O75309 829 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 DANCRP0C864 163 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 CCDC166P0CW27 439 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 COX7A2P14406 83 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 ZNF10P21506 573 aaPredicted RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 CCND1P24385 295 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 STX4Q12846 297 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 CR1LQ2VPA4 569 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 DCST1Q5T197 706 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 ADGRD1Q6QNK2 874 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 PLXDC2Q6UX71 529 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 LINC00523Q86TU6 105 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 UTP15Q8TED0 518 aaKnown RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 KAT2AQ92830 837 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 RHBDF1Q96CC6 855 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 C11orf24Q96F05 449 aaPredicted RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 FAM53CQ9NYF3 392 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 FETUBQ9UGM5 382 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 CNOT11Q9UKZ1 510 aaKnown RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 KIAA1549Q9HCM3 1950 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 EIF3FO00303 357 aaPredicted RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 TMPRSS2O15393 492 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 THBS1P07996 1170 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 CD8BP10966 210 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 PPP2R1BP30154 601 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 GMPRP36959 345 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 CDKN2BP42772 138 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 CCR8P51685 355 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 RAB38P57729 211 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 SIRPAP78324 504 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 SERTAD2Q14140 314 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 KLHL38Q2WGJ6 581 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 TTLL9Q3SXZ7 439 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 TSTD2Q5T7W7 516 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 ADGRE4PQ86SQ3 457 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 MPP5Q8N3R9 675 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 OTUD6BQ8N6M0 293 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 NOA1Q8NC60 698 aaKnown RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 SLC2A12Q8TD20 617 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 ZNF418Q8TF45 676 aaPredicted RBP8.31□□□□□ -1.08
USP28-205ENST00000537706 OSBPL9Q96SU4 736 aa8.31□□□□□ -1.08
USP28-205ENST00000537706 NPLQ9BXD5 320 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms