RNA–Protein interactions for RNA: ENST00000537435.2

USP44-203, Transcript of ubiquitin specific peptidase 44, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP44, Length 2,499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-203ENST00000537435 KMOO15229 486 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 CSO75390 466 aaKnown RBP13.58□□□□□ -0.23
USP44-203ENST00000537435 RB1P06400 928 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 PSMB5P28074 263 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 CSTF2P33240 577 aaKnown RBP eCLIP13.58□□□□□ -0.23
USP44-203ENST00000537435 SOX3P41225 446 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.58□□□□□ -0.23
USP44-203ENST00000537435 ATAD3BQ5T9A4 648 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 C12orf73Q69YU5 71 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 PGBD2Q6P3X8 592 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 BCDIN3DQ7Z5W3 292 aaKnown RBP13.58□□□□□ -0.23
USP44-203ENST00000537435 AKAP14Q86UN6 197 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 AMZ2Q86W34 360 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 NATD1Q8N6N6 113 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 TMIEQ8NEW7 156 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 KLHL6Q8WZ60 621 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 DHRS1Q96LJ7 313 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 CEP19Q96LK0 163 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 PELI2Q9HAT8 420 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 SEC14L3Q9UDX4 400 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 NDOR1Q9UHB4 597 aa13.58□□□□□ -0.23
USP44-203ENST00000537435 LSM2Q9Y333 95 aaKnown RBP13.58□□□□□ -0.23
USP44-203ENST00000537435 MTCL1Q9Y4B5 1905 aaKnown RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 HTR3EA5X5Y0 456 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 H7BY64 318 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 SLC28A2O43868 658 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 TMPRSS11DO60235 418 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 TIMP1P01033 207 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 EPCAMP16422 314 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 CXCR2P25025 360 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 SLC6A11P48066 632 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 HNRNPA1L2Q32P51 320 aaKnown RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 TMEM201Q5SNT2 666 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 MEDAGQ5VYS4 303 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 CCBE1Q6UXH8 406 aaPredicted RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 CASP12Q6UXS9 341 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 GDPD3Q7L5L3 318 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 UCN3Q969E3 161 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 TRIM43Q96BQ3 446 aaPredicted RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 TMEM80Q96HE8 168 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 PRAP1Q96NZ9 151 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 TEFMQ96QE5 360 aaKnown RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 SDHCQ99643 169 aaPredicted RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 ASPNQ9BXN1 380 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 POLR2J3Q9H1A7 115 aaKnown RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 SERHL2Q9H4I8 314 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 LHX9Q9NQ69 397 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 TEX10Q9NXF1 929 aaPredicted RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 SLC27A6Q9Y2P4 619 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 WBP11Q9Y2W2 641 aaKnown RBP13.58□□□□□ -0.24
USP44-203ENST00000537435 PCDHGA4Q9Y5G9 962 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 CCDC88CQ9P219 2028 aa13.58□□□□□ -0.24
USP44-203ENST00000537435 LOC110117498-PIK3R3F6TDL0 507 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 SNX4O95219 450 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 ERGP11308 486 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 FRKP42685 505 aaPredicted RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 CCT3P49368 545 aaKnown RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 DEFA1P59665 94 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 DEFA3P59666 94 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 TARDBPQ13148 414 aaKnown RBP eCLIP13.57□□□□□ -0.24
USP44-203ENST00000537435 SPHARQ15513 63 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 SYPL1Q16563 259 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 LRRK1Q38SD2 2015 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 SZRD1Q7Z422 152 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 CELF5Q8N6W0 485 aaKnown RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 TCEANCQ8N8B7 351 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 PIK3R3Q92569 461 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 ZBED6CLQ96FA7 236 aaPredicted RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 SLC6A18Q96N87 628 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 ZNF607Q96SK3 696 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 TM7SF3Q9NS93 570 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 ERVK13-1Q9NX77 482 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 NOTCH4Q99466 2003 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 A0A075B6Q4 140 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 EDDM13A0A1B0GTR0 161 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 PDZK1P1A8MUH7 402 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 HOXC11O43248 304 aaPredicted RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 OR12D1P0DN82 309 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 CCR8P51685 355 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 ZNF91Q05481 1191 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 RPA4Q13156 261 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 KRR1Q13601 381 aaKnown RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 NCF4Q15080 339 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 NUDT13Q86X67 352 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 OR5K2Q8NHB8 316 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 SLC7A13Q8TCU3 470 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 CXorf40AQ8TE69 158 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 QRFPRQ96P65 431 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 SLC30A2Q9BRI3 323 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 TSSK6Q9BXA6 273 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 MVB12BQ9H7P6 319 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 WASH6PQ9NQA3 447 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 DYRK4Q9NR20 520 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 C14orf119Q9NWQ9 140 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 CRNNQ9UBG3 495 aaPredicted RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 POU2F3Q9UKI9 436 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 ACAD8Q9UKU7 415 aa13.57□□□□□ -0.24
USP44-203ENST00000537435 RPL36Q9Y3U8 105 aaKnown RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 MN1Q10571 1320 aaPredicted RBP13.57□□□□□ -0.24
USP44-203ENST00000537435 PLXND1Q9Y4D7 1925 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms