RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 RSL1D1O76021 490 aaKnown RBP18.5■□□□□ 0.55
CPSF1-209ENST00000532725 F10P00742 488 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 UQCRHP07919 91 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 SLC35E2P0CK97 266 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 PRPH2P23942 346 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 TIA1P31483 386 aaKnown RBP eCLIP18.5■□□□□ 0.55
CPSF1-209ENST00000532725 GALNSP34059 522 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 TNFSF10P50591 281 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 SLC18A1P54219 525 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 MLF1P58340 268 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 MAGOHP61326 146 aaKnown RBP18.5■□□□□ 0.55
CPSF1-209ENST00000532725 TLR1Q15399 786 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 IMPG1Q17R60 797 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 SLC48A1Q6P1K1 146 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 BEST3Q8N1M1 668 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 ZNF321PQ8N8H1 164 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 OR4K14Q8NGD5 310 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 OR1N1Q8NGS0 311 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 ZNF721Q8TF20 911 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 SENP5Q96HI0 755 aaPredicted RBP18.5■□□□□ 0.55
CPSF1-209ENST00000532725 METTL2AQ96IZ6 378 aaKnown RBP18.5■□□□□ 0.55
CPSF1-209ENST00000532725 HEY2Q9UBP5 337 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 ZDHHC2Q9UIJ5 367 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 FIS1Q9Y3D6 152 aa18.5■□□□□ 0.55
CPSF1-209ENST00000532725 HELZ2Q9BYK8 2649 aaKnown RBP18.49■□□□□ 0.55
CPSF1-209ENST00000532725 A0A1W2PS29 197 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 GOLGA6L10A6NI86 522 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 TMEM233B4DJY2 109 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 ITM2AO43736 263 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 PRKNO60260 465 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-209ENST00000532725 COX7A2P14406 83 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 PIK3R1P27986 724 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 XKP51811 444 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 WDR4P57081 412 aaKnown RBP18.49■□□□□ 0.55
CPSF1-209ENST00000532725 ZNF169Q14929 603 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-209ENST00000532725 CHI3L2Q15782 390 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 OR2T11Q8NH01 316 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 FAM76AQ8TAV0 307 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 SLC2A12Q8TD20 617 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 C16orf78Q8WTQ4 265 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 FAIM2Q9BWQ8 316 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 OR8D2Q9GZM6 311 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 ILKAPQ9H0C8 392 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-209ENST00000532725 ZNF395Q9H8N7 513 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-209ENST00000532725 DLGAP4Q9Y2H0 992 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 PCDHGA10Q9Y5H3 936 aa18.49■□□□□ 0.55
CPSF1-209ENST00000532725 GNG14A0A1W2PPG7 69 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 TMEM120BA0PK00 339 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 OR5H15A6NDH6 313 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 TMEM200CA6NKL6 621 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 CDK2AP1O14519 115 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 ZFAND5O76080 213 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 CHEK2O96017 543 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 IGKV3-11P04433 115 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 SERPINE1P05121 402 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 ANXA4P09525 319 aaPredicted RBP18.48■□□□□ 0.55
CPSF1-209ENST00000532725 LINC00032P0C843 101 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 DRD2P14416 443 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 CD96P40200 585 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 PLIN5Q00G26 463 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 TUBA3CQ13748 450 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 ZNF750Q32MQ0 723 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 SH2D4BQ5SQS7 431 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 TUBA3EQ6PEY2 450 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 PPP1R14CQ8TAE6 165 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.48■□□□□ 0.55
CPSF1-209ENST00000532725 RIT1Q92963 219 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 ARL8AQ96BM9 186 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 PELOQ9BRX2 385 aaKnown RBP18.48■□□□□ 0.55
CPSF1-209ENST00000532725 C20orf27Q9GZN8 174 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 CPAMD8Q8IZJ3 1885 aa18.48■□□□□ 0.55
CPSF1-209ENST00000532725 GABRR3A8MPY1 467 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 HRKO00198 91 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 RGS14O43566 566 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 SEC22BO75396 215 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 LYPLA1O75608 230 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-209ENST00000532725 IL3P08700 152 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 CPMP14384 443 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 ST13P50502 369 aaKnown RBP18.47■□□□□ 0.55
CPSF1-209ENST00000532725 INPP5JQ15735 1006 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-209ENST00000532725 SPRED3Q2MJR0 410 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 AGBL2Q5U5Z8 902 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 ZNF468Q5VIY5 522 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-209ENST00000532725 NOXRED1Q6NXP6 359 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 HSDL2Q6YN16 418 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 HDXQ7Z353 690 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 ANKRD42Q8N9B4 389 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 OR8K3Q8NH51 312 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 AGR3Q8TD06 166 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 DOK4Q8TEW6 326 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 THAP3Q8WTV1 239 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-209ENST00000532725 TWIST2Q8WVJ9 160 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 ZNF681Q96N22 645 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 EBPLQ9BY08 206 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.47■□□□□ 0.55
CPSF1-209ENST00000532725 ARGLU1Q9NWB6 273 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-209ENST00000532725 C1orf109Q9NX04 203 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 PSME2Q9UL46 239 aa18.47■□□□□ 0.55
CPSF1-209ENST00000532725 TRAV17A0A0B4J275 112 aa18.46■□□□□ 0.55
CPSF1-209ENST00000532725 TMEM114B3SHH9 223 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms