RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TFEBP19484 476 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 MLLT10P55197 1068 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 TLE3Q04726 772 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 SLC29A2Q14542 456 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CPSF6Q16630 551 aaKnown RBP eCLIP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 DEFB134Q4QY38 66 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 KANK2Q63ZY3 851 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 DRICH1Q6PGQ1 229 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 LINC00696Q6ZRV3 163 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 PRSS41Q7RTY9 318 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 DCUN1D3Q8IWE4 304 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 OR6C4Q8NGE1 309 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 FBXW5Q969U6 566 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CLPTM1LQ96KA5 538 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 MOGAT1Q96PD6 335 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 EFHD1Q9BUP0 239 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 BCL2L14Q9BZR8 327 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 NPHS2Q9NP85 383 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 GRHL1Q9NZI5 618 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 SH2B3Q9UQQ2 575 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 DTNAQ9Y4J8 743 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 A0A0G2JPF8 293 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 LINC00587B1AMM8 73 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 HNRNPCL3B7ZW38 293 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 UBXN8O00124 270 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 WWP2O00308 870 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 C1orf105O95561 183 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 HNRNPCL4P0DMR1 293 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 XRCC1P18887 633 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 VAMP1P23763 118 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 RAD23AP54725 363 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 RAB14P61106 215 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 TBPL1P62380 186 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 RPS15P62841 145 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 UBE2IP63279 158 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 FOXK2Q01167 660 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 SSX2Q16385 188 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 LSM12Q3MHD2 195 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CPZQ66K79 652 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CLEC2AQ6UVW9 174 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 SPESP1Q6UW49 350 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 IDO2Q6ZQW0 420 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 GPSM1Q86YR5 675 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ERI1Q8IV48 349 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 FAM109AQ8N4B1 249 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 TTC29Q8NA56 475 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 OR4D9Q8NGE8 314 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CD200R1Q8TD46 325 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNF480Q8WV37 535 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 PCNPQ8WW12 178 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 RERGQ96A58 199 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 NARS2Q96I59 477 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 IKZF3Q9UKT9 509 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ABCA12Q86UK0 2595 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CCDC182A6NF36 153 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 E7EQ34 232 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 F8W8V4 182 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 H3BMM5 538 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 NDUFS4O43181 175 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 AKAP10O43572 662 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CTSVO60911 334 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ECDO95905 644 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ENO1P06733 434 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 SFTPCP11686 197 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 HPGDP15428 266 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ITGA3P26006 1051 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 PTPN4P29074 926 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 GPX6P59796 221 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 SPANXN3Q5MJ09 141 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 NANOGP8Q6NSW7 305 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 AGTRAPQ6RW13 159 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CEACAM20Q6UY09 585 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CDHR3Q6ZTQ4 885 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ACAD11Q709F0 780 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CCDC36Q8IYA8 594 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ADGRF3Q8IZF5 1079 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ENDOVQ8N8Q3 282 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 ZSCAN1Q8NBB4 408 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 OR9A4Q8NGU2 314 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 OR5K2Q8NHB8 316 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 TAAR9Q96RI9 348 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 MTERF1Q99551 399 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 AARSD1Q9BTE6 412 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 SORBS1Q9BX66 1292 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 SEMA4CQ9C0C4 833 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 TSPAN10Q9H1Z9 355 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 MOV10Q9HCE1 1003 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 GPR27Q9NS67 375 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 NINJ2Q9NZG7 142 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 CTSFQ9UBX1 484 aa7.49□□□□□ -1.21
LIMCH1-219ENST00000514096 PLXNB3Q9ULL4 1909 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 GLOD5A6NK44 160 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SGK494L7N484 410 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 ZNHIT1O43257 154 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 TCEA3O75764 348 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 RPN2P04844 631 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 GP1BAP07359 652 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 UQCRBP14927 111 aa7.48□□□□□ -1.21
LIMCH1-219ENST00000514096 SHMT2P34897 504 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms