RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PSMA3P25788 255 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 RPL35P42766 123 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 HNRNPFP52597 415 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 AP1S2P56377 157 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 KCNK10P57789 538 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 TAP2Q03519 686 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 DOC2AQ14183 400 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 BTBD16Q32M84 506 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ZC3H14Q6PJT7 736 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 NRARPQ7Z6K4 114 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SDR16C5Q8N3Y7 309 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ATG16L2Q8NAA4 619 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 UBE2FQ969M7 185 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 NACC2Q96BF6 587 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 DPH7Q9BTV6 452 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ABCG4Q9H172 646 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 OR51B5Q9H339 312 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 PAK1IP1Q9NWT1 392 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ZSCAN32Q9NX65 697 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 LRIT1Q9P2V4 623 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 EIF3LQ9Y262 564 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SLC9A8Q9Y2E8 581 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 C17orf113A0A1B0GUU1 675 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ISPDA4D126 451 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 TRPC5OSA6NMA1 111 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF99A8MXY4 864 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 H0YJX3 145 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 RTCAO00442 366 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SNRNP200O75643 2136 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 FKBP9O95302 570 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 CLDN9O95484 217 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 HLCSP50747 726 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 OR1D5P58170 312 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 NXPH1P58417 271 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 KCNAB2Q13303 367 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 NPTX1Q15818 432 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ZXDCQ2QGD7 858 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 ANGPTL8Q6UXH0 198 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 GALNT10Q86SR1 603 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 OOSP2Q86WS3 158 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 NRROSQ86YC3 692 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 METTL27Q8N6F8 245 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 OR6C4Q8NGE1 309 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 UTP15Q8TED0 518 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 LGALS12Q96DT0 336 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SORBS1Q9BX66 1292 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 MOV10Q9HCE1 1003 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 MRPS30Q9NP92 439 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 C8orf4Q9NR00 106 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SUSD2Q9UGT4 822 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 SPATA2Q9UM82 520 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 POLR3HQ9Y535 204 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 CLCA3PQ9Y6N3 262 aa8.26□□□□□ -1.09
LIMCH1-209ENST00000509277 CELSR3Q9NYQ7 3312 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 GNG14A0A1W2PPG7 69 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 CIB4A0PJX0 185 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 G3V2T6 193 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 AIREO43918 545 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 ABCB7O75027 752 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 MATN4O95460 622 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 MLYCDO95822 493 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 MYF6P23409 242 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 POU1F1P28069 291 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 DIO3P55073 304 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 CLDN6P56747 220 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 CD47Q08722 323 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 SLAMF1Q13291 335 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 CYBRD1Q53TN4 286 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 FAM205BPQ63HN1 556 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 FAM91A1Q658Y4 838 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 TICAM1Q8IUC6 712 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 OR13F1Q8NGS4 319 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 NELL1Q92832 810 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 APOLD1Q96LR9 279 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 C3orf30Q96M34 536 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 CCDC3Q9BQI4 270 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 CDCP1Q9H5V8 836 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 NTN4Q9HB63 628 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 SCN3BQ9NY72 215 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 TAS2R9Q9NYW1 312 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 PTBP2Q9UKA9 531 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 TESMINQ9Y4I5 508 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 A0A1W2PR77 199 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 ANKDD1BA6NHY2 528 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 GFYI3L273 518 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 PPM1DO15297 605 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 PLOD3O60568 738 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 SNX4O95219 450 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 ACADLP28330 430 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 RAB28P51157 221 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 TMBIM6P55061 237 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 ABRAXAS2Q15018 415 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 HIST2H2ACQ16777 129 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 AP5B1Q2VPB7 878 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 RUNDC3AQ59EK9 446 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 HIST2H2AA3Q6FI13 130 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 TUBA3EQ6PEY2 450 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 ZNF517Q6ZMY9 492 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 SZRD1Q7Z422 152 aa8.25□□□□□ -1.09
LIMCH1-209ENST00000509277 CLYBLQ8N0X4 340 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms