RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 COQ3Q9NZJ6 369 aa16.27■□□□□ 0.2
SQSTM1-211ENST00000506690 MGAT4BQ9UQ53 548 aa16.27■□□□□ 0.2
SQSTM1-211ENST00000506690 GSTK1Q9Y2Q3 226 aa16.27■□□□□ 0.2
SQSTM1-211ENST00000506690 AGAP14A8MT82 685 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 CLDN7O95471 211 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 SLC6A1P30531 599 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 ZNF157P51786 506 aaPredicted RBP16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 ATN1P54259 1190 aaPredicted RBP16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 FABP5Q01469 135 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 ALDH6A1Q02252 535 aaKnown RBP16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 ATXN7L2Q5T6C5 722 aaPredicted RBP16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 CXorf57Q6NSI4 855 aaKnown RBP16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 CD200R1LQ6Q8B3 271 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 GPALPP1Q8IXQ4 340 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 FAM26EQ8N5C1 309 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 ZNF366Q8N895 744 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 OR4K1Q8NGD4 311 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 APOBEC4Q8WW27 367 aaKnown RBP16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 SENP5Q96HI0 755 aaPredicted RBP16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 PKP4Q99569 1192 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 RC3H2Q9HBD1 1191 aaKnown RBP16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 CCDC88CQ9P219 2028 aa16.27■□□□□ 0.19
SQSTM1-211ENST00000506690 RPS10-NUDT3A0A1W2PQS6 291 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 MGAT4DA6NG13 374 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 H3BN98 237 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 TAF1CQ15572 869 aaPredicted RBP16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 C3orf38Q5JPI3 329 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 SLC25A30Q5SVS4 291 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 FAM122CQ6P4D5 195 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 TRIM40Q6P9F5 258 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 CHST9Q7L1S5 443 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 MSANTD3Q96H12 275 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 SORCS2Q96PQ0 1159 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 ATG10Q9H0Y0 220 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 KCNN2Q9H2S1 579 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 LIN7BQ9HAP6 207 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 ISYNA1Q9NPH2 558 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 NMRK2Q9NPI5 230 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 ZSCAN32Q9NX65 697 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 PCDH10Q9P2E7 1040 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 RAB23Q9ULC3 237 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 NCKAP1Q9Y2A7 1128 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 A0A1B0GVM2 712 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 ARAFP10398 606 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 HSD3B1P14060 373 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 HSD3B2P26439 372 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 GABRA5P31644 462 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 INPP1P49441 399 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 GAS1P54826 345 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 RHOAP61586 193 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 MAP2K5Q13163 448 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 AANATQ16613 207 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 COL28A1Q2UY09 1125 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 MPPE1Q53F39 396 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 XKR6Q5GH73 641 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 GPR139Q6DWJ6 353 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 DENND1CQ8IV53 801 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 CXorf40BQ96DE9 158 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 WACQ9BTA9 647 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 BRF2Q9HAW0 419 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 ATP6V1HQ9UI12 483 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 ACSL6Q9UKU0 697 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 PADI3Q9ULW8 664 aa16.26■□□□□ 0.19
SQSTM1-211ENST00000506690 TMEM129A0AVI4 362 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 GFYI3L273 518 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 CASKO14936 926 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 PRKYO43930 277 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 C6orf47O95873 294 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 NR2F6P10588 404 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 ELAVL4P26378 380 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 CD52P31358 61 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 SPAM1P38567 509 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 BDKRB1P46663 353 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 CYP4F8P98187 520 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 ZNF267Q14586 743 aaPredicted RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 PLA1AQ53H76 456 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 SYT14P1Q58G82 188 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 CLLU1Q5K131 121 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 OR2G6Q5TZ20 316 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 MFSD14CQ5VZR4 134 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 COMMD7Q86VX2 200 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 VRK3Q8IV63 474 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 GALNT11Q8NCW6 608 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 OR11H4Q8NGC9 324 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 SKA2Q8WVK7 121 aaPredicted RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 PHF21AQ96BD5 680 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 WRAP53Q9BUR4 548 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 PRR14Q9BWN1 585 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 POLDIP3Q9BY77 421 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 EMC7Q9NPA0 242 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 ASB4Q9Y574 426 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 H0YIV9 168 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 GTPBP1O00178 669 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 TLX2O43763 284 aaPredicted RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 AKAP8O43823 692 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 SOD1P00441 154 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 TP53P04637 393 aaPredicted RBP16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 OPRD1P41143 372 aa16.25■□□□□ 0.19
SQSTM1-211ENST00000506690 AVPR1BP47901 424 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms