RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 AHSPQ9NZD4 102 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CYP8B1Q9UNU6 501 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HS3ST2Q9Y278 367 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SMIM30A4D0T7 59 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 B4DGG1 531 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 JRKO75564 520 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 APOL3O95236 402 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZNF30P17039 623 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 JUNBP17275 347 aaPredicted RBP10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DDCP20711 480 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MAGEA12P43365 314 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SPIBQ01892 262 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HSF2Q03933 536 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CDK5R2Q13319 367 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RAPSNQ13702 412 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HNRNPA1L2Q32P51 320 aaKnown RBP10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HSD17B12Q53GQ0 312 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 AKIRIN2Q53H80 203 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 IKBIPQ70UQ0 350 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 OR4N5Q8IXE1 308 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FAM46DQ8NEK8 389 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 BARD1Q99728 777 aaKnown RBP10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CCDC32Q9BV29 185 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PRDM8Q9NQV8 689 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 H2AFY2Q9P0M6 372 aaPredicted RBP10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ENOPH1Q9UHY7 261 aa10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DICER1Q9UPY3 1922 aaKnown RBP10.27□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TARM1B6A8C7 271 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 INMT-MINDY4F8WBC2 141 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NDUFS4O43181 175 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 KIAA0513O60268 411 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 EBLN1P0CF75 366 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RYKP34925 604 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GDI2P50395 445 aaKnown RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 AQP6Q13520 282 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FBXO43Q4G163 708 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 IDO2Q6ZQW0 420 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TBC1D19Q8N5T2 526 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ASPNQ9BXN1 380 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 KIAA0355O15063 1070 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 TAPBPO15533 448 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SGTAO43765 313 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC28A2O43868 658 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HPRP00739 348 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PTPN5P54829 565 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CDH12P55289 794 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 EMX2Q04743 252 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CHRNEQ04844 493 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DBPQ10586 325 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 POU4F3Q15319 338 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 AMZ1Q400G9 498 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RNASE12Q5GAN4 147 aaKnown RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FAM205BPQ63HN1 556 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 OLIG3Q7RTU3 272 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 WDR53Q7Z5U6 358 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 EPHX4Q8IUS5 362 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FGF14Q92915 247 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PEX13Q92968 403 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ERMAPQ96PL5 475 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FYTTD1Q96QD9 318 aaKnown RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 AIF1LQ9BQI0 150 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SFXN1Q9H9B4 322 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 AKIP1Q9NQ31 210 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NFKBIL1Q9UBC1 381 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FZD4Q9ULV1 537 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HCN4Q9Y3Q4 1203 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 DNMT3AQ9Y6K1 912 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PIAS3Q9Y6X2 628 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RP1P56715 2156 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 LOC285556D6RIA3 1793 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SCN5AQ14524 2016 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SDC3O75056 442 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GABARAPO95166 117 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NUP62P37198 522 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SPRED1Q7Z699 444 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FAM9CQ8IZT9 166 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CPXM2Q8N436 756 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 PCNPQ8WW12 178 aaKnown RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZNF689Q96CS4 500 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 C11orf24Q96F05 449 aaPredicted RBP10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HYLS1Q96M11 299 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC6A15Q9H2J7 730 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MAP10Q9P2G4 905 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CA14Q9ULX7 337 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 MAB21L2Q9Y586 359 aa10.26□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 QSOX1O00391 747 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CPNE6O95741 557 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 VIPP01282 170 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RPN2P04844 631 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 FABP3P05413 133 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HNRNPA1P09651 372 aaKnown RBP eCLIP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NR2F6P10588 404 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 UBL4AP11441 157 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 M6PRP20645 277 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CCR4P51679 360 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RPS7P62081 194 aaKnown RBP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CLVS2Q5SYC1 327 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ASB18Q6ZVZ8 466 aa10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ZNF551Q7Z340 670 aaPredicted RBP10.25□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 YIPF7Q8N8F6 280 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms