RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NKX2-6A6NCS4 301 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 WASHC1A8K0Z3 465 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 G3V3Y1 287 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ACOT7O00154 380 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 HAX1O00165 279 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SAP18O00422 153 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 BCKDKO14874 412 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 UGDHO60701 494 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SH3BGRLO75368 114 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CLPSP04118 112 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 C2P06681 752 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CELA3AP09093 270 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 GLI4P10075 376 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 EPB42P16452 691 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TNNI3P19429 210 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ENDOUP21128 410 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ACVR2AP27037 513 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 GALNSP34059 522 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SSR2P43308 183 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DNASE1L1P49184 302 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TNFRSF17Q02223 184 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PLGLB1Q02325 96 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FOLH1Q04609 750 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ASPHQ12797 758 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SETDB1Q15047 1291 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PCBP2Q15366 365 aaKnown RBP eCLIP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SPRED3Q2MJR0 410 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SLC22A10Q63ZE4 541 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 C18orf63Q68DL7 685 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 METTL2BQ6P1Q9 378 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TBC1D1Q86TI0 1168 aaPredicted RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CCDC71Q8IV32 467 aaPredicted RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CTAGE3PQ8IX95 158 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ST13P4Q8IZP2 240 aaPredicted RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 L3MBTL4Q8NA19 623 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 WDR20Q8TBZ3 569 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PPWD1Q96BP3 646 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RBM18Q96H35 190 aaKnown RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SMC6Q96SB8 1091 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 KCNJ16Q9NPI9 418 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ACOT9Q9Y305 439 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PCDHGB3Q9Y5G1 929 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PCDHGA11Q9Y5H2 935 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CHCHD2Q9Y6H1 151 aaPredicted RBP11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SPACA6W5XKT8 324 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 A0A1W2PR48 441 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 LRRC14BA6NHZ5 514 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SUPT3HB4E1H0 165 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TMPRSS11DO60235 418 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 HCN1O60741 890 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SUPT3HO75486 399 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 GPR75O95800 540 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 S100BP04271 92 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FBXO45P0C2W1 286 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RFPL3SP0C7P2 107 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PCNAP12004 261 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PTX3P26022 381 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 STX2P32856 288 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PIGAP37287 484 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ALDH18A1P54886 795 aaKnown RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SLC37A1P57057 533 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 IRF9Q00978 393 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 C2orf54Q08AI8 447 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CUL3Q13618 768 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SLC10A1Q14973 349 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ACAP2Q15057 778 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FAM47EQ6ZV65 393 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RAPH1Q70E73 1250 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DND1Q8IYX4 353 aaKnown RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 LRRC25Q8N386 305 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TEX9Q8N6V9 391 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ZNF441Q8N8Z8 693 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OR5M9Q8NGP3 310 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CHTF18Q8WVB6 975 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 KCTD4Q8WVF5 259 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SREK1Q8WXA9 508 aaKnown RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 EXT2Q93063 718 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SPACA9Q96E40 222 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DGAT2Q96PD7 388 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MTERF1Q99551 399 aaKnown RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ACKR4Q9NPB9 350 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ZDHHC18Q9NUE0 388 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 COPS7AQ9UBW8 275 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PHF11Q9UIL8 331 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 UTP11Q9Y3A2 253 aaKnown RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ABCA4P78363 2273 aa11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 HRNRQ86YZ3 2850 aaPredicted RBP11.29□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PRRC2AP48634 2157 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MED12Q93074 2177 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NF1P21359 2839 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 A0A087X1B8 175 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 A0A0G2JNJ9 132 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ANKRD33BA6NCL7 494 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 LRRC3CA6NJW4 275 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SYCE1LA8MT33 242 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FOXO6A8MYZ6 492 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FOXE1O00358 373 aaPredicted RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 WDR1O75083 606 aa11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 EEDO75530 441 aaKnown RBP11.28□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PRKRAO75569 313 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms