RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 TRPV6Q9H1D0 765 aa4.6□□□□□ -1.67
CCDC39-202ENST00000471307 NUDT4Q9NZJ9 180 aa4.6□□□□□ -1.67
CCDC39-202ENST00000471307 IFNKQ9P0W0 207 aa4.6□□□□□ -1.67
CCDC39-202ENST00000471307 ARMCX3Q9UH62 379 aaPredicted RBP4.6□□□□□ -1.67
CCDC39-202ENST00000471307 GINS2Q9Y248 185 aa4.6□□□□□ -1.67
CCDC39-202ENST00000471307 PPP2R2CQ9Y2T4 447 aa4.6□□□□□ -1.67
CCDC39-202ENST00000471307 SIP14410 1827 aa4.6□□□□□ -1.67
CCDC39-202ENST00000471307 IGHV3OR16-10A0A075B7F0 116 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 EPM2AB3EWF7 344 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 O00370 1275 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 B4GALT5O43286 388 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 AP5Z1O43299 807 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CSDE1O75534 798 aaKnown RBP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 RPS6KA5O75582 802 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CLTAP09496 248 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 NR2F1P10589 423 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 SLC2A2P11168 524 aaPredicted RBP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 IL11P20809 199 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 GTF2H1P32780 548 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CSTF2P33240 577 aaKnown RBP eCLIP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 EIF2DP41214 584 aaKnown RBP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CASP4P49662 377 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 ALDH3A2P51648 485 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 VAMP7P51809 220 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 ZNF75DP51815 510 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 AP3M2P53677 418 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 MGAT3Q09327 533 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CETN1Q12798 172 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 BFSP1Q12934 665 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 SNRNP35Q16560 246 aaKnown RBP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CA9Q16790 459 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 DCAF4L1Q3SXM0 396 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 HSP90AA4PQ58FG1 418 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 TMEM211Q6ICI0 200 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 NOTUMQ6P988 496 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 APTXQ7Z2E3 356 aaKnown RBP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CCDC91Q7Z6B0 441 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CD302Q8IX05 232 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 POMGNT2Q8NAT1 580 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 ATL1Q8WXF7 558 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 TSPAN18Q96SJ8 248 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 SEPHS2Q99611 448 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 NKX3-1Q99801 234 aaPredicted RBP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 FAM213AQ9BRX8 229 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 EDEM3Q9BZQ6 932 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 XPO4Q9C0E2 1151 aaKnown RBP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 C11orf49Q9H6J7 331 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 AGPAT5Q9NUQ2 364 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 CPSF3Q9UKF6 684 aaKnown RBP4.59□□□□□ -1.67
CCDC39-202ENST00000471307 SNX5Q9Y5X3 404 aa4.59□□□□□ -1.67
CCDC39-202ENST00000471307 GTPBP10A4D1E9 387 aaKnown RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 GOLGA8IPA6NC78 632 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 GOLGA8JA6NMD2 632 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 PES1O00541 588 aaKnown RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 FAM189A1O60320 539 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 N4BP1O75113 896 aaKnown RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 BCL10O95999 233 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 ADRB2P07550 413 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 STAG3L1P0CL83 205 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 HLA-FP30511 346 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 TNNT3P45378 269 aaPredicted RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 ACOT2P49753 483 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 PGFP49763 221 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 TMEM50BP56557 158 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 UBXN1Q04323 297 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CYP24A1Q07973 514 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 ZNF415Q09FC8 603 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CCDC173Q0VFZ6 552 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CALCOCO2Q13137 446 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CBWD6Q4V339 395 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CBWD3Q5JTY5 395 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 SPECC1LQ69YQ0 1117 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 GBP6Q6ZN66 633 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 FAM228AQ86W67 206 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CBWD2Q8IUF1 395 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 VSTM4Q8IW00 320 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 THNSL1Q8IYQ7 743 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CNPY4Q8N129 248 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CCAR2Q8N163 923 aaKnown RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 NUP37Q8NFH4 326 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 SLC35C1Q96A29 364 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CPB2Q96IY4 423 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 ERGIC2Q96RQ1 377 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 NUP58Q9BVL2 599 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CCDC94Q9BW85 323 aaPredicted RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 FTHL17Q9BXU8 183 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 TRIM6Q9C030 488 aaPredicted RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 OR10A4Q9H209 315 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 ASB7Q9H672 318 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 MED20Q9H944 212 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 RPF1Q9H9Y2 349 aaKnown RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 Q9N2K0 584 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 SPHK2Q9NRA0 654 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 TEX10Q9NXF1 929 aaPredicted RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 RBAKQ9NYW8 714 aaPredicted RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 MRPL15Q9P015 296 aaKnown RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 THEGQ9P2T0 379 aa4.58□□□□□ -1.68
CCDC39-202ENST00000471307 C19orf25Q9UFG5 118 aaPredicted RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 PIN4Q9Y237 131 aaKnown RBP4.58□□□□□ -1.68
CCDC39-202ENST00000471307 CITO14578 2027 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms