RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CNRIP1Q96F85 164 aaPredicted RBP13.85□□□□□ -0.19
COL9A3-209ENST00000469852 CCDC28BQ9BUN5 200 aa13.85□□□□□ -0.19
COL9A3-209ENST00000469852 FAM107BQ9H098 131 aa13.85□□□□□ -0.19
COL9A3-209ENST00000469852 UTS2RQ9UKP6 389 aa13.85□□□□□ -0.19
COL9A3-209ENST00000469852 SMG1Q96Q15 3661 aaKnown RBP13.84□□□□□ -0.19
COL9A3-209ENST00000469852 BLACEA4D250 179 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 GABRR3A8MPY1 467 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 C9JVG2 144 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 SCAMP2O15127 329 aaKnown RBP13.84□□□□□ -0.19
COL9A3-209ENST00000469852 UBDO15205 165 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 SEC24DO94855 1032 aaPredicted RBP13.84□□□□□ -0.19
COL9A3-209ENST00000469852 CYC1P08574 325 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 CD1EP15812 388 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 IL12AP29459 219 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 FEN1P39748 380 aaKnown RBP13.84□□□□□ -0.19
COL9A3-209ENST00000469852 ASMTP46597 345 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 UFM1P61960 85 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 STX4Q12846 297 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 CPEB2Q7Z5Q1 589 aaKnown RBP13.84□□□□□ -0.19
COL9A3-209ENST00000469852 RAB43Q86YS6 212 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 OR7A2PQ8NGA2 310 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 OR4K14Q8NGD5 310 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 METTL21AQ8WXB1 218 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 STON2Q8WXE9 905 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 ZNF681Q96N22 645 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 SIKE1Q9BRV8 207 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 BRINP2Q9C0B6 783 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 REEP4Q9H6H4 257 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 SLAMF7Q9NQ25 335 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 MIEF1Q9NQG6 463 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 PNO1Q9NRX1 252 aaKnown RBP13.84□□□□□ -0.19
COL9A3-209ENST00000469852 P4HTMQ9NXG6 502 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 KLHL14Q9P2G3 628 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 ADAM21Q9UKJ8 722 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 IGSF10Q6WRI0 2623 aa13.84□□□□□ -0.19
COL9A3-209ENST00000469852 MGAQ8IWI9 3026 aa13.83□□□□□ -0.19
COL9A3-209ENST00000469852 IGHV1-45A0A0A0MS14 117 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 A0A1W2PQ72 361 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 K7ENP7 123 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 SHOX2O60902 331 aaPredicted RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 IGHEP01854 428 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 CELA2AP08217 269 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 EFNA1P20827 205 aaPredicted RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 PIK3R1P27986 724 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 SOX18P35713 384 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 ZFP36L2P47974 494 aaKnown RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 XKP51811 444 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 ARFIP2P53365 341 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 CLDN8P56748 225 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 OR4D2P58180 307 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 ACTN3Q08043 901 aaPredicted RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 CHAF1BQ13112 559 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 BROXQ5VW32 411 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 CPZQ66K79 652 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 INO80CQ6PI98 192 aaPredicted RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 OR9I1Q8NGQ6 314 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 SUN3Q8TAQ9 357 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 PTPMT1Q8WUK0 201 aaPredicted RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 CIDECQ96AQ7 238 aaPredicted RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 RILPQ96NA2 401 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 ELAC2Q9BQ52 826 aaKnown RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF700Q9H0M5 742 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 SLC35C2Q9NQQ7 365 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 EHD3Q9NZN3 535 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 ATP6V1HQ9UI12 483 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 FBXL4Q9UKA2 621 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 WBP11Q9Y2W2 641 aaKnown RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 COPG1Q9Y678 874 aaKnown RBP13.83□□□□□ -0.2
COL9A3-209ENST00000469852 MED13Q9UHV7 2174 aa13.83□□□□□ -0.2
COL9A3-209ENST00000469852 HRKO00198 91 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 TBX19O60806 448 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 IFNA16P05015 189 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 CT62P0C5K7 136 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 LAMP1P11279 417 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 CPMP14384 443 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 HPCAL1P37235 193 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 STT3AP46977 705 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 TMPRSS3P57727 454 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 C21orf58P58505 322 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 Q0VFX4 171 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 SERTAD2Q14140 314 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 LTB4RQ15722 352 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 CEBPEQ15744 281 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 DEFB109BQ30KR1 87 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 CRTC2Q53ET0 693 aaPredicted RBP13.82□□□□□ -0.2
COL9A3-209ENST00000469852 PAPD4Q6PIY7 484 aaKnown RBP13.82□□□□□ -0.2
COL9A3-209ENST00000469852 SPATA21Q7Z572 469 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 PARP9Q8IXQ6 854 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 PPCDCQ96CD2 204 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 DPY30Q9C005 99 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF385DQ9H6B1 395 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF160Q9HCG1 818 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 TAS2R7Q9NYW3 318 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 SH3BP4Q9P0V3 963 aa13.82□□□□□ -0.2
COL9A3-209ENST00000469852 C19orf25Q9UFG5 118 aaPredicted RBP13.82□□□□□ -0.2
COL9A3-209ENST00000469852 ARGFXA6NJG6 315 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 MYO1GB0I1T2 1018 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 SLC35E2P0CK97 266 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 COX7A2P14406 83 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 IDO1P14902 403 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms