RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MMP25Q9NPA2 562 aa11.17□□□□□ -0.62
VPS13D-204ENST00000469054 MYNNQ9NPC7 610 aa11.17□□□□□ -0.62
VPS13D-204ENST00000469054 GPR83Q9NYM4 423 aa11.17□□□□□ -0.62
VPS13D-204ENST00000469054 C5AR2Q9P296 337 aa11.17□□□□□ -0.62
VPS13D-204ENST00000469054 MARCOQ9UEW3 520 aaPredicted RBP11.17□□□□□ -0.62
VPS13D-204ENST00000469054 GIMAP2Q9UG22 337 aa11.17□□□□□ -0.62
VPS13D-204ENST00000469054 PSME2Q9UL46 239 aa11.17□□□□□ -0.62
VPS13D-204ENST00000469054 G3BP2Q9UN86 482 aaKnown RBP11.17□□□□□ -0.62
VPS13D-204ENST00000469054 CLCA3PQ9Y6N3 262 aa11.17□□□□□ -0.62
VPS13D-204ENST00000469054 CCDC88CQ9P219 2028 aa11.17□□□□□ -0.62
VPS13D-204ENST00000469054 LOC400499M0QZD8 3231 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 C17orf105B2RV13 164 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 ATXN7O15265 892 aaPredicted RBP11.16□□□□□ -0.62
VPS13D-204ENST00000469054 ZZEF1O43149 2961 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 OR10H2O60403 315 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 BCKDHAP12694 445 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 COX7A2P14406 83 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 SDC1P18827 310 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 DDCP20711 480 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 MAPK1P28482 360 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 GPR143P51810 404 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 C2orf80Q0P641 193 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 RAPSNQ13702 412 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 LY6DQ14210 128 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 SMU1Q2TAY7 513 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 TCTN3Q6NUS6 607 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 JMJD6Q6NYC1 403 aaPredicted RBP11.16□□□□□ -0.62
VPS13D-204ENST00000469054 RGS9BPQ6ZS82 235 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 IKBIPQ70UQ0 350 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 LSM14AQ8ND56 463 aaKnown RBP11.16□□□□□ -0.62
VPS13D-204ENST00000469054 OR14A16Q8NHC5 309 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 CDC26Q8NHZ8 85 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 BRIX1Q8TDN6 353 aaKnown RBP11.16□□□□□ -0.62
VPS13D-204ENST00000469054 PSMF1Q92530 271 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 PPWD1Q96BP3 646 aaKnown RBP11.16□□□□□ -0.62
VPS13D-204ENST00000469054 KLHL29Q96CT2 875 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 EGLN2Q96KS0 407 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 SMAD5Q99717 465 aaKnown RBP11.16□□□□□ -0.62
VPS13D-204ENST00000469054 SLCO1B3Q9NPD5 702 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 EHD3Q9NZN3 535 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 UTS2RQ9UKP6 389 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 PPIEQ9UNP9 301 aaKnown RBP11.16□□□□□ -0.62
VPS13D-204ENST00000469054 PCDHGB7Q9Y5F8 929 aa11.16□□□□□ -0.62
VPS13D-204ENST00000469054 A0A1W2PS29 197 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 C2orf72A6NCS6 295 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 TRPC5OSA6NMA1 111 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 DYRK3O43781 588 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 VPS4BO75351 444 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 ERAL1O75616 437 aaKnown RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 ITGAMP11215 1152 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 PRPS2P11908 318 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 CPMP14384 443 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 PORP16435 677 aaPredicted RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 LBPP18428 481 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 CSNK2A2P19784 350 aaPredicted RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 GALNSP34059 522 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 EMX2Q04743 252 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 MAD2L1Q13257 205 aaPredicted RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 ZNF750Q32MQ0 723 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 VWA5B1Q5TIE3 1220 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 AGAP7PQ5VUJ5 663 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 IL23RQ5VWK5 629 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 DGAT2L6Q6ZPD8 337 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 LARP4Q71RC2 724 aaKnown RBP eCLIP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 TICAM1Q8IUC6 712 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 LRRC34Q8IZ02 419 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 SAMD14Q8IZD0 417 aaPredicted RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 APCDD1LQ8NCL9 501 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 MORN4Q8NDC4 146 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 C9orf43Q8TAL5 461 aaPredicted RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 SLC2A12Q8TD20 617 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 ELP5Q8TE02 316 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 RIT1Q92963 219 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 EXOSC8Q96B26 276 aaKnown RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 CNRIP1Q96F85 164 aaPredicted RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 ZNF681Q96N22 645 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 AGAP4Q96P64 663 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 TSSK3Q96PN8 268 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 C1orf50Q9BV19 199 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 KCNK13Q9HB14 408 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 MIEF1Q9NQG6 463 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 TAS2R7Q9NYW3 318 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 BAIAP2L1Q9UHR4 511 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 EXO1Q9UQ84 846 aaKnown RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 EIF3LQ9Y262 564 aaKnown RBP11.15□□□□□ -0.62
VPS13D-204ENST00000469054 ZNF780BQ9Y6R6 833 aa11.15□□□□□ -0.62
VPS13D-204ENST00000469054 A8MUI8 341 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 K7EM74 188 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 SDHDO14521 159 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 ZNF195O14628 629 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 DDAH2O95865 285 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 PDGFAP04085 211 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 ALPPP05187 535 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 FEN1P39748 380 aaKnown RBP11.14□□□□□ -0.63
VPS13D-204ENST00000469054 ASMTP46597 345 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 CLCN2P51788 898 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 PGDP52209 483 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 ERVK-8P63133 956 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 SPRED3Q2MJR0 410 aa11.14□□□□□ -0.63
VPS13D-204ENST00000469054 LACTB2Q53H82 288 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms