RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 ABCG4Q9H172 646 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 SPNS1Q9H2V7 528 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 ELOVL6Q9H5J4 265 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 WDR55Q9H6Y2 383 aaPredicted RBP3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 RXFP3Q9NSD7 469 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 FARSBQ9NSD9 589 aaKnown RBP3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 SEMA4GQ9NTN9 838 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 PARPBPQ9NWS1 579 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 IRAK4Q9NWZ3 460 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 GEMIN8Q9NWZ8 242 aaKnown RBP3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 GPRC5BQ9NZH0 403 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 OR6C2Q9NZP2 312 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 GIMAP2Q9UG22 337 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 ZNF225Q9UK10 706 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 ZNF490Q9ULM2 529 aaPredicted RBP3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 BTBD3Q9Y2F9 522 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 PLXND1Q9Y4D7 1925 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 ZDBF2Q9HCK1 2354 aa3.89□□□□□ -1.79
TMEM39A-204ENST00000468545 FANCMQ8IYD8 2048 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 IGHV1OR21-1A0A087WYE8 117 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 A0A088AWK7 358 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 A0A0J9YY10 115 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 LNP1A1A4G5 178 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 OR5K3A6NET4 321 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 ANKDD1BA6NHY2 528 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SLC9B1P1A6NJY1 282 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 TRPC5OSA6NMA1 111 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 E9PBE3 544 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SLCO1B7G3V0H7 640 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SLC28A1O00337 649 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CDX4O14627 284 aaPredicted RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 HAT1O14929 419 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 HDAC3O15379 428 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 KIF1CO43896 1103 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SNX3O60493 162 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 KLHL41O60662 606 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SHOX2O60902 331 aaPredicted RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 PEX11AO75192 247 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SEC22BO75396 215 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SCAF4O95104 1147 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 TGDSO95455 350 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 FAM107AO95990 144 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 RPLP0P05388 317 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 ENO1P06733 434 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 FGF4P08620 206 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 ERGP11308 486 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 JUPP14923 745 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 EZRP15311 586 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CD22P20273 847 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 MAGP20916 626 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SLC6A2P23975 617 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CXCR2P25025 360 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CD1CP29017 333 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 EPHA3P29320 983 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 FASLGP48023 281 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 GFERP55789 205 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 RPS13P62277 151 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CSNK1G2P78368 415 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 ABATP80404 500 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 HMGCS1Q01581 520 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 GALNT1Q10472 559 aaPredicted RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 TRAF3Q13114 568 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 KIR2DS3Q14952 304 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 UGT3A2Q3SY77 523 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 NRN1LQ496H8 165 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 PAGE2BQ5JRK9 111 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CACHD1Q5VU97 1274 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 ATG9BQ674R7 924 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 FCRL6Q6DN72 434 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 ADNP2Q6IQ32 1131 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 GRHL2Q6ISB3 625 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 METTL2BQ6P1Q9 378 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 FBXO42Q6P3S6 717 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 SPESP1Q6UW49 350 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 EPGNQ6UW88 154 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 MAVSQ7Z434 540 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 PIGWQ7Z7B1 504 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 C17orf82Q86X59 251 aaPredicted RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 PDSS2Q86YH6 399 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 KLHDC8AQ8IYD2 350 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CACNA2D3Q8IZS8 1091 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 TBC1D19Q8N5T2 526 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 L3MBTL4Q8NA19 623 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 AVL9Q8NBF6 648 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CCDC197Q8NCU1 140 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 OR2L3Q8NG85 312 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CPT1CQ8TCG5 803 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 N4BP2L2Q92802 583 aaPredicted RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 TUBGCP3Q96CW5 907 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 REPS1Q96D71 796 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 PTCD3Q96EY7 689 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 ZDHHC12Q96GR4 267 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 FAR2Q96K12 515 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 MARK4Q96L34 752 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 C3orf30Q96M34 536 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 CATSPER2Q96P56 530 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 FCRL4Q96PJ5 515 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 OR52B2Q96RD2 323 aa3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 MTERF1Q99551 399 aaKnown RBP3.88□□□□□ -1.79
TMEM39A-204ENST00000468545 MAP3K3Q99759 626 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms