RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 TMEM200CA6NKL6 621 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 C19orf84I3L1E1 186 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 ACSL3O95573 720 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 RBP1P09455 135 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 FAM58BPP0C7Q3 252 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 MAGEA5P43359 124 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 MAN2A2P49641 1150 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 PMPCAQ10713 525 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 TBL3Q12788 808 aaKnown RBP16.21■□□□□ 0.19
COL7A1-206ENST00000466591 IFT88Q13099 833 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 SLC10A1Q14973 349 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 MPEG1Q2M385 716 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 ST13P4Q8IZP2 240 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-206ENST00000466591 TAGAPQ8N103 731 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 LIX1Q8N485 282 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 NUBPLQ8TB37 319 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 ZNF721Q8TF20 911 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 IFT81Q8WYA0 676 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 PHF21BQ96EK2 531 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 FBXL20Q96IG2 436 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 C16orf45Q96MC5 204 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-206ENST00000466591 SERPINI1Q99574 410 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 NOL11Q9H8H0 719 aaKnown RBP16.21■□□□□ 0.19
COL7A1-206ENST00000466591 AHSPQ9NZD4 102 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 B4GALT7Q9UBV7 327 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 RNF11Q9Y3C5 154 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 ATG4BQ9Y4P1 393 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 CRYBG3Q68DQ2 2970 aa16.21■□□□□ 0.19
COL7A1-206ENST00000466591 CELSR2Q9HCU4 2923 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 A0A0G2JMM0 328 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 A0A1W2PPB8 328 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 A0A1W2PRS3 328 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 KIR3DP1A8MWS1 328 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 CAPN14A8MX76 684 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 H0YIV9 168 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 PRKRAO75569 313 aaKnown RBP16.2■□□□□ 0.18
COL7A1-206ENST00000466591 KRT38O76015 456 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 GPR75O95800 540 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 CCL3P10147 92 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 PIK3R1P27986 724 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 SERPINB3P29508 390 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 ARFIP1P53367 373 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 HNRNPH2P55795 449 aaKnown RBP16.2■□□□□ 0.18
COL7A1-206ENST00000466591 E2F2Q14209 437 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 PCBP2Q15366 365 aaKnown RBP eCLIP16.2■□□□□ 0.18
COL7A1-206ENST00000466591 CDSNQ15517 529 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 WLSQ5T9L3 541 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 OR52E8Q6IFG1 317 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 CHERPQ8IWX8 916 aaKnown RBP16.2■□□□□ 0.18
COL7A1-206ENST00000466591 DND1Q8IYX4 353 aaKnown RBP16.2■□□□□ 0.18
COL7A1-206ENST00000466591 TMEM251Q8N6I4 163 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 DOK4Q8TEW6 326 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 SARAFQ96BY9 339 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 CDK15Q96Q40 435 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 SPOCK3Q9BQ16 436 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 ELOVL6Q9H5J4 265 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 NINJ2Q9NZG7 142 aa16.2■□□□□ 0.18
COL7A1-206ENST00000466591 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.2■□□□□ 0.18
COL7A1-206ENST00000466591 OR14I1A6ND48 311 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 LRRC14BA6NHZ5 514 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 POC1B-GALNT4F8VUJ3 575 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 ADAM10O14672 748 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 SIX3O95343 332 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-206ENST00000466591 GBAP04062 536 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 MTHFD2P13995 350 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 KRT15P19012 456 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 ACVR2AP27037 513 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 SERPINB9P50453 376 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 NEK2P51955 445 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 TLE4Q04727 773 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 PCDH1Q08174 1060 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 CUL3Q13618 768 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 WHAMMP3Q1A5X7 153 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 TSNAXIP1Q2TAA8 658 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 GXYLT1Q4G148 440 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 SGO1Q5FBB7 561 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 PIGGQ5H8A4 983 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 PRAMEF20Q5VT98 475 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 PAGE2Q7Z2X7 111 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 ZNF572Q7Z3I7 529 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-206ENST00000466591 C9orf40Q8IXQ3 194 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 SLC15A4Q8N697 577 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 MNS1Q8NEH6 495 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 SPACA9Q96E40 222 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-206ENST00000466591 TRIM8Q9BZR9 551 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 ACSS3Q9H6R3 686 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 PNPLA3Q9NST1 481 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 TUBA8Q9NY65 449 aaPredicted RBP16.19■□□□□ 0.18
COL7A1-206ENST00000466591 RNF6Q9Y252 685 aa16.19■□□□□ 0.18
COL7A1-206ENST00000466591 ITPR2Q14571 2701 aa16.18■□□□□ 0.18
COL7A1-206ENST00000466591 TRGV5A0A0B4J1U4 118 aa16.18■□□□□ 0.18
COL7A1-206ENST00000466591 OR6C76A6NM76 312 aa16.18■□□□□ 0.18
COL7A1-206ENST00000466591 FOXO6A8MYZ6 492 aa16.18■□□□□ 0.18
COL7A1-206ENST00000466591 TP53I11O14683 189 aa16.18■□□□□ 0.18
COL7A1-206ENST00000466591 PROM1O43490 865 aa16.18■□□□□ 0.18
COL7A1-206ENST00000466591 GUCY1B2O75343 617 aa16.18■□□□□ 0.18
COL7A1-206ENST00000466591 EEDO75530 441 aaKnown RBP16.18■□□□□ 0.18
COL7A1-206ENST00000466591 ALDOAP04075 364 aaKnown RBP16.18■□□□□ 0.18
COL7A1-206ENST00000466591 DEKP35659 375 aaKnown RBP16.18■□□□□ 0.18
COL7A1-206ENST00000466591 PIGAP37287 484 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms