RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 KLHDC8AQ8IYD2 350 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 GHDCQ8N2G8 530 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 TRPV1Q8NER1 839 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.78■□□□□ 0.6
SDF4-205ENST00000465727 TMEM203Q969S6 136 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 C1GALT1C1Q96EU7 318 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 POLR2J3Q9H1A7 115 aaKnown RBP18.78■□□□□ 0.6
SDF4-205ENST00000465727 TMEM39AQ9NV64 488 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 GLTPQ9NZD2 209 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 ADAM30Q9UKF2 790 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 MAP4K5Q9Y4K4 846 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 ZNF840PA6NDX5 716 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 EVX1P49640 407 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 LIM2P55344 173 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 PUM1Q14671 1186 aaKnown RBP eCLIP18.78■□□□□ 0.68e-7■■■□□ 16.9
SDF4-205ENST00000465727 REEP3Q6NUK4 255 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 RETSATQ6NUM9 610 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 CD200R1LQ6Q8B3 271 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 CEACAM20Q6UY09 585 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 UFD1Q92890 307 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 GPR137Q96N19 417 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 PKP4Q99569 1192 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 PIGUQ9H490 435 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 MAT2BQ9NZL9 334 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 COMMD3Q9UBI1 195 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 ELF5Q9UKW6 265 aaPredicted RBP18.78■□□□□ 0.6
SDF4-205ENST00000465727 CDH10Q9Y6N8 788 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 TRAV19A0A0A6YYK7 116 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 FAM227AF5H4B4 570 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 INMT-MINDY4F8WBC2 141 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 OR10H3O60404 316 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 IFI30P13284 250 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 ZNF8P17098 575 aaPredicted RBP18.77■□□□□ 0.6
SDF4-205ENST00000465727 ETV5P41161 510 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 ETV1P50549 477 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 SMIM11AP58511 58 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 TAGLNQ01995 201 aaKnown RBP18.77■□□□□ 0.6
SDF4-205ENST00000465727 IL18Q14116 193 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 CRTC2Q53ET0 693 aaPredicted RBP18.77■□□□□ 0.6
SDF4-205ENST00000465727 KIAA1211LQ6NV74 962 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 TPRG1Q6ZUI0 275 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 USP50Q70EL3 339 aaPredicted RBP18.77■□□□□ 0.6
SDF4-205ENST00000465727 HDDC2Q7Z4H3 204 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 TSPAN33Q86UF1 283 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 OR7G3Q8NG95 312 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 PPCDCQ96CD2 204 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 ASIC4Q96FT7 647 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 MRPS18AQ9NVS2 196 aaKnown RBP18.77■□□□□ 0.6
SDF4-205ENST00000465727 ZSCAN32Q9NX65 697 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 PTTG3PQ9NZH4 202 aa18.77■□□□□ 0.6
SDF4-205ENST00000465727 CCDC88CQ9P219 2028 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 NPIPB15A6NHN6 443 aaPredicted RBP18.77■□□□□ 0.59
SDF4-205ENST00000465727 TEX28O15482 410 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 TBL1XO60907 577 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 FURINP09958 794 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 DGKGP49619 791 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 DGKEP52429 567 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 DSTNP60981 165 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 RPS25P62851 125 aaKnown RBP18.77■□□□□ 0.59
SDF4-205ENST00000465727 MZT2AQ6P582 158 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 CRTC1Q6UUV9 634 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 GLRX5Q86SX6 157 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 GLCCI1Q86VQ1 547 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 SLC37A3Q8NCC5 494 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 GPR156Q8NFN8 814 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 OR8H1Q8NGG4 311 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 MTERF3Q96E29 417 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 ALG14Q96F25 216 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 NECTIN4Q96NY8 510 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 B3GAT2Q9NPZ5 323 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 GKN1Q9NS71 199 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 MOSPD1Q9UJG1 213 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 ACSL6Q9UKU0 697 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 ING4Q9UNL4 249 aa18.77■□□□□ 0.59
SDF4-205ENST00000465727 PIPSLA2A3N6 862 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 K7ERQ8 282 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 SLC22A5O76082 557 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 H1F0P07305 194 aaKnown RBP18.76■□□□□ 0.59
SDF4-205ENST00000465727 ATP1B2P14415 290 aaPredicted RBP18.76■□□□□ 0.59
SDF4-205ENST00000465727 HK1P19367 917 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 SERPINA4P29622 427 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 EVI2BP34910 448 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 SEC23BQ15437 767 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 FLYWCH1Q4VC44 716 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 SYT14P1Q58G82 188 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 TMIGD1Q6UXZ0 262 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 C2orf49Q9BVC5 232 aaPredicted RBP18.76■□□□□ 0.59
SDF4-205ENST00000465727 DNAH12Q6ZR08 3092 aa18.76■□□□□ 0.59
SDF4-205ENST00000465727 SNTNA6NMZ2 147 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 CASKO14936 926 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 PDGFAP04085 211 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 LHCGRP22888 699 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 CCND3P30281 292 aaPredicted RBP18.75■□□□□ 0.59
SDF4-205ENST00000465727 CSKP41240 450 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 PER3P56645 1201 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 RAB40BQ12829 278 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 COX10Q12887 443 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 NDUFA9Q16795 377 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 PGBD2Q6P3X8 592 aa18.75■□□□□ 0.59
SDF4-205ENST00000465727 DNAJB7Q7Z6W7 309 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms