RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 M0R3H8 397 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 DNAJB5O75953 348 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 SLCO2B1O94956 709 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ITGB7P26010 798 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 MMP12P39900 470 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 BCAP31P51572 246 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 RUNX3Q13761 415 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 FBXO43Q4G163 708 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 TMEM107Q6UX40 140 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 OR4N5Q8IXE1 308 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 IQCF1Q8N6M8 205 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 NATD1Q8N6N6 113 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 PAPD5Q8NDF8 572 aaKnown RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF671Q8TAW3 534 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ZFP90Q8TF47 636 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 RLN3Q8WXF3 142 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ECHDC3Q96DC8 303 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 LYSMD1Q96S90 227 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 BARD1Q99728 777 aaKnown RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 SPATA9Q9BWV2 254 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 GIN1Q9NXP7 522 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ENPP5Q9UJA9 477 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 GFYI3L273 518 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 CXCL10P02778 98 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 HOXB2P14652 356 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ITIH1P19827 911 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 PPP2R2BQ00005 443 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 CST6Q15828 149 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 TMEM31Q5JXX7 168 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 NDUFAF5Q5TEU4 345 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF852Q6ZMS4 543 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ADIPOR2Q86V24 386 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 IGFN1Q86VF2 1251 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 NCSTNQ92542 709 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ARRDC3Q96B67 414 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 TSSK6Q9BXA6 273 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 NMNAT1Q9HAN9 279 aaPredicted RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 CALML5Q9NZT1 146 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 HSPE1-MOB4S4R3N1 261 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 SEC16AO15027 2179 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 SCN10AQ9Y5Y9 1956 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 CLCA1A8K7I4 914 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 GPX2P18283 190 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 SLC6A12P48065 614 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 TUBA1BP68363 451 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF33BQ06732 778 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF155Q12901 538 aaPredicted RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 KEAP1Q14145 624 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 MICAQ29983 383 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 CTU2Q2VPK5 515 aaKnown RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 LEXMQ3ZCV2 418 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 LIPKQ5VXJ0 399 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 KLHL17Q6TDP4 642 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 TUBA1AQ71U36 451 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 TMEM150AQ86TG1 271 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 FAM217AQ8IXS0 508 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 GHDCQ8N2G8 530 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 RAB7BQ96AH8 199 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 MGAT4BQ9UQ53 548 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 A0A0C4DFX4 3053 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 FAM86C2PA6NEL3 165 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 FRS3O43559 492 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 GMFGO60234 142 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 CDRT1O95170 752 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 NPPBP16860 134 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 PCDH1Q08174 1060 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 GAB1Q13480 694 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 ITPRIPL2Q3MIP1 535 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 DEFB134Q4QY38 66 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 RIMKLAQ8IXN7 391 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 TBC1D15Q8TC07 691 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 DEPDC7Q96QD5 511 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 GDF15Q99988 308 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 NECTIN3Q9NQS3 549 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 STON1Q9Y6Q2 735 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 CCRL2O00421 344 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 HAT1O14929 419 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 LAMTOR5O43504 91 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 DYRK3O43781 588 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 B3GALT2O43825 422 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 PSIP1O75475 530 aaKnown RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 ETHE1O95571 254 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 POLR2CP19387 275 aaPredicted RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 SMSP52788 366 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 RAB15P59190 212 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 DLX2Q07687 328 aaPredicted RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 SLC14A1Q13336 389 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 IL18Q14116 193 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 RNASE12Q5GAN4 147 aaKnown RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 SLC35F1Q5T1Q4 408 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 LRIF1Q5T3J3 769 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 HENMT1Q5T8I9 393 aaKnown RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 UNC5DQ6UXZ4 953 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 HSDL2Q6YN16 418 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 OR10H4Q8NGA5 316 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 ASPNQ9BXN1 380 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 LMAN2LQ9H0V9 348 aa11.07□□□□□ -0.64
NPHP4-204ENST00000460696 ZBTB20Q9HC78 741 aaPredicted RBP11.07□□□□□ -0.64
NPHP4-204ENST00000460696 TM7SF3Q9NS93 570 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms