RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ABCC13Q9NSE7 274 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ING3Q9NXR8 418 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 AHSPQ9NZD4 102 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ARMCX3Q9UH62 379 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MKLN1Q9UL63 735 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SNX24Q9Y343 169 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NEU2Q9Y3R4 380 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 U3KQV3 271 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 LAMA3Q16787 3333 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PTPRFP10586 1907 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NID2Q14112 1375 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 FOCADQ5VW36 1801 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC5A10A0PJK1 596 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 C9orf170A2RU37 121 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 HELTA6NFD8 242 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 E9PAM4 449 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ABCD4O14678 606 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ATP2C2O75185 946 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 AVILO75366 819 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ERN1O75460 977 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 AKAP3O75969 853 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 LYPLA2O95372 231 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 BRI3O95415 125 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ABHD2P08910 425 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 FTH1P19P0C7X4 201 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 UROSP10746 265 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NPPBP16860 134 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 FUT1P19526 365 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MMP8P22894 467 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CCND3P30281 292 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC6A4P31645 630 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CCR7P32248 378 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GMPRP36959 345 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NAMPTP43490 491 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 KPNA2P52292 529 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 OR2B6P58173 313 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ESRRGP62508 458 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 BNC1Q01954 994 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SCN1BQ07699 218 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TCP10Q12799 353 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 BNIP3Q12983 259 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GAGE1Q13065 139 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 IKZF1Q13422 519 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ASAH1Q13510 395 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ATP1A4Q13733 1029 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CSHL1Q14406 222 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 IRF3Q14653 427 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SHBQ15464 509 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 USF2Q15853 346 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GOLGA7BQ2TAP0 167 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 KLHL22Q53GT1 634 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TAF1BQ53T94 588 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PAN3Q58A45 887 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 PHYHD1Q5SRE7 291 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 BRAT1Q6PJG6 821 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 OTOP2Q7RTS6 562 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TMEM17Q86X19 198 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 VRK2Q86Y07 508 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TGIF2LXQ8IUE1 241 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 STPG3Q8N7X2 389 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 OR4K14Q8NGD5 310 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MAFAQ8NHW3 353 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SHKBP1Q8TBC3 707 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 OIT3Q8WWZ8 545 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CASKIN2Q8WXE0 1202 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 ADAMTS14Q8WXS8 1223 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 AP3S1Q92572 193 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC7A6OSQ96CW6 309 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 C14orf144Q96I85 54 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 CAPZA3Q96KX2 299 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 FOXN4Q96NZ1 517 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 SERPINB11Q96P15 392 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 RAB3IPQ96QF0 476 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 KCNA7Q96RP8 456 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 KLHDC3Q9BQ90 382 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MGME1Q9BQP7 344 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TRMOQ9BU70 441 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MRPL13Q9BYD1 178 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MROQ9BYG7 248 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NMUR2Q9GZQ4 415 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 BCO1Q9HAY6 547 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NIT2Q9NQR4 276 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 LANCL2Q9NS86 450 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 TREM2Q9NZC2 230 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 HSF4Q9ULV5 492 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 POFUT2Q9Y2G5 429 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GOLT1BQ9Y3E0 138 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 GRIP1Q9Y3R0 1128 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 MAB21L2Q9Y586 359 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 WIF1Q9Y5W5 379 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 NFS1Q9Y697 457 aa4.57□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A0G2JMP0 313 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A0X1KG70 313 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 TCRBV7S2A1N4TA0A589 114 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 SMLR1H3BR10 107 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 M0QZ92 97 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 M0QZK8 103 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 PRKAB2O43741 272 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 TBX19O60806 448 aa4.56□□□□□ -1.68
CCDC88A-209ENST00000456975 USP12O75317 370 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms