RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 MMGT1Q8N4V1 131 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 FAM133AQ8N9E0 248 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 OR11H4Q8NGC9 324 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 FAM151AQ8WW52 585 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 FAM46BQ96A09 425 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 TMEM186Q96B77 213 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 LINGO1Q96FE5 620 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 IGSF21Q96ID5 467 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 MS4A14Q96JA4 679 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 DUX5Q96PT3 197 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 FAM213AQ9BRX8 229 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 POLR3CQ9BUI4 534 aaPredicted RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 ACPTQ9BZG2 426 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 GANQ9H2C0 597 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 RIMS4Q9H426 269 aaPredicted RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 ACTL8Q9H568 366 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 ZNF701Q9NV72 531 aaPredicted RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 SLC38A7Q9NVC3 462 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 SPHK1Q9NYA1 384 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 DONSONQ9NYP3 566 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 UBQLN2Q9UHD9 624 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 POU2F3Q9UKI9 436 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 TSPAN16Q9UKR8 245 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 TRAF3IP3Q9Y228 551 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 MRPL11Q9Y3B7 192 aaKnown RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 KLK4Q9Y5K2 254 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 CLCA3PQ9Y6N3 262 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 AP1M2Q9Y6Q5 423 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 NRXN2Q9P2S2 1712 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 ANKRD31Q8N7Z5 1873 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ASTN1O14525 1302 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 IGLV3-22A0A075B6J6 115 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 A0A087X0T9 212 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 A0A0B4J203 849 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 MAGEB16A2A368 324 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ARHGEF35A5YM69 484 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 PRR23AA6NEV1 266 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ANKRD61A6NGH8 418 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ZNF587BE7ETH6 402 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 F8VVB4 439 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 F8VWA3 439 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 NPIPA3F8WFD2 350 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 H0YIG0 161 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 TLR4O00206 839 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 PDXKO00764 312 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 RASGRF2O14827 1237 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ARPC2O15144 300 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 NOL3O60936 208 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 N4BP1O75113 896 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 KRT36O76013 467 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 SLITRK3O94933 977 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 TRIM16O95361 564 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 HEXBP07686 556 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 SP1P08047 785 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 FAM228BP0C875 321 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 AREGP15514 252 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 NMT1P30419 496 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 SFNP31947 248 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 NKX2-1P43699 371 aaPredicted RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 CASP4P49662 377 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 PRELPP51888 382 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 THOP1P52888 689 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 TUBA1BP68363 451 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 MFAP5Q13361 173 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 STXBP2Q15833 593 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 SLC15A2Q16348 729 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 EXOC3L4Q17RC7 722 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ITPRIPL2Q3MIP1 535 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ZC2HC1CQ53FD0 456 aaPredicted RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 LYSMD4Q5XG99 296 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 PM20D1Q6GTS8 502 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 OR4A47Q6IF82 309 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ZCCHC12Q6PEW1 402 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 STXBP4Q6ZWJ1 553 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ANKRD33Q7Z3H0 272 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 PIWIL4Q7Z3Z4 852 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 ELMOD2Q8IZ81 293 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 KDM8Q8N371 416 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 RNF10Q8N5U6 811 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 SPATA4Q8NEY3 305 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 OR52E1Q8NGJ3 308 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 CCDC110Q8TBZ0 833 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 CHURC1Q8WUH1 139 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 TSACCQ96A04 125 aaPredicted RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 NSMCE2Q96MF7 247 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 RTP3Q9BQQ7 232 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 ZNF577Q9BSK1 485 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 URM1Q9BTM9 101 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 LRRC1Q9BTT6 524 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 TEKT3Q9BXF9 490 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 DDX47Q9H0S4 455 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 CSTL1Q9H114 145 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 UBQLN3Q9H347 655 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 VCPKMTQ9H867 229 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 PELI2Q9HAT8 420 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 PHPT1Q9NRX4 125 aaPredicted RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 ZCCHC3Q9NUD5 404 aaKnown RBP3.77□□□□□ -1.81
VPS29-202ENST00000447578 FAM118AQ9NWS6 357 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 AIPL1Q9NZN9 384 aa3.77□□□□□ -1.81
VPS29-202ENST00000447578 GCNT4Q9P109 453 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms