RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 SEMA3GQ9NS98 782 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 TEX10Q9NXF1 929 aaPredicted RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 WDR37Q9Y2I8 494 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 IRAK3Q9Y616 596 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 KIAA1549LQ6ZVL6 1849 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 WASHC1A8K0Z3 465 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 KMOO15229 486 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 SLC28A2O43868 658 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 VEGFDO43915 354 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 TMPRSS11DO60235 418 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 TPST2O60704 377 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 EFCAB14O75071 495 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 PTTG1O95997 202 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 PIPP12273 146 aaPredicted RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 VIPR2P41587 438 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 VASPP50552 380 aaPredicted RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 XKP51811 444 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 PCBP4P57723 403 aaKnown RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 TARDBPQ13148 414 aaKnown RBP eCLIP11.2□□□□□ -0.62
CD44-209ENST00000433892 PIN1Q13526 163 aaPredicted RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 KCNJ8Q15842 424 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 SYPL1Q16563 259 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 HNRNPA1L2Q32P51 320 aaKnown RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 ATAD3BQ5T9A4 648 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 WASH2PQ6VEQ5 465 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 GDPD3Q7L5L3 318 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 OLIG3Q7RTU3 272 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 HMGN2P46Q86SG4 172 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 MMAAQ8IVH4 418 aaKnown RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 AMER3Q8N944 861 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 OR5D16Q8NGK9 328 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 SLC7A13Q8TCU3 470 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 WFIKKN2Q8TEU8 576 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 KLHL6Q8WZ60 621 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 RSPRY1Q96DX4 576 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 OTUB1Q96FW1 271 aaPredicted RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 ZNF354BQ96LW1 612 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 TRNT1Q96Q11 434 aaKnown RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 TREX2Q9BQ50 279 aaPredicted RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 POLR2J3Q9H1A7 115 aaKnown RBP11.2□□□□□ -0.62
CD44-209ENST00000433892 SERHL2Q9H4I8 314 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 NEUROD4Q9HD90 331 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 C14orf119Q9NWQ9 140 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 ERVK13-1Q9NX77 482 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 EHD3Q9NZN3 535 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 SEC14L3Q9UDX4 400 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 MGAT4BQ9UQ53 548 aa11.2□□□□□ -0.62
CD44-209ENST00000433892 RANBP2P49792 3224 aaKnown RBP11.19□□□□□ -0.62
CD44-209ENST00000433892 PRAMEF27A3QJZ7 478 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 ANTXRLA6NF34 631 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 OTOL1A6NHN0 477 aaPredicted RBP11.19□□□□□ -0.62
CD44-209ENST00000433892 A8MU76 341 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 WWP2O00308 870 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 PPM1DO15297 605 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 SEMA3DO95025 777 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 SCG5P05408 212 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 SERPIND1P05546 499 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 OR12D1P0DN82 309 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 TNNI3P19429 210 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 CSTF2P33240 577 aaKnown RBP eCLIP11.19□□□□□ -0.62
CD44-209ENST00000433892 KCNJ5P48544 419 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 CCT3P49368 545 aaKnown RBP11.19□□□□□ -0.62
CD44-209ENST00000433892 SNRPGP62308 76 aaKnown RBP11.19□□□□□ -0.62
CD44-209ENST00000433892 LRRC26Q2I0M4 334 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 UAP1L1Q3KQV9 507 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 TOR1AIP1Q5JTV8 583 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 C1orf53Q5VUE5 145 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 SLX4IPQ5VYV7 408 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 PGBD2Q6P3X8 592 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 CCBE1Q6UXH8 406 aaPredicted RBP11.19□□□□□ -0.62
CD44-209ENST00000433892 CASP12Q6UXS9 341 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 CCDC190Q86UF4 302 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 AKAP14Q86UN6 197 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 COMTD1Q86VU5 262 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 IQCF1Q8N6M8 205 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 TCEANCQ8N8B7 351 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 TMIEQ8NEW7 156 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 POF1BQ8WVV4 589 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 TXNDC15Q96J42 360 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 LGR4Q9BXB1 951 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 MVB12BQ9H7P6 319 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 FZD3Q9NPG1 666 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 DYRK4Q9NR20 520 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 POU2F3Q9UKI9 436 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 MKLN1Q9UL63 735 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 LSM2Q9Y333 95 aaKnown RBP11.19□□□□□ -0.62
CD44-209ENST00000433892 RBMX2Q9Y388 322 aaKnown RBP11.19□□□□□ -0.62
CD44-209ENST00000433892 USP34Q70CQ2 3546 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 PNMA8CA0A1B0GUJ8 204 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 LOC110117498-PIK3R3F6TDL0 507 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 M0R3H8 397 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 FAAHO00519 579 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 OR1F1O43749 312 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 SSX4O60224 188 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 CSO75390 466 aaKnown RBP11.19□□□□□ -0.62
CD44-209ENST00000433892 PDE9AO76083 593 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 ADH1CP00326 375 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 RB1P06400 928 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 PTGER1P34995 402 aa11.19□□□□□ -0.62
CD44-209ENST00000433892 RPS19P39019 145 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms