RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 IGKV3D-11A0A0A0MRZ8 115 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 TRBV5-3A0A0A0MS03 114 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 DCDC2BA2VCK2 349 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 FXYD1O00168 92 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 RFXANKO14593 260 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 B4GALT2O60909 372 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 JRKO75564 520 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 ERAL1O75616 437 aaKnown RBP13.38□□□□□ -0.27
SF3B1-204ENST00000414963 KCNH1O95259 989 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 RECKO95980 971 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 ATP1B1P05026 303 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 CD63P08962 238 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 ZGLP1P0C6A0 271 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 CPMP14384 443 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 CD82P27701 267 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 PTPN4P29074 926 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 NTSP30990 170 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 GALNSP34059 522 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 NUDT2P50583 147 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 MANFP55145 182 aaKnown RBP13.38□□□□□ -0.27
SF3B1-204ENST00000414963 HBA1P69905 142 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 RHAGQ02094 409 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 OCA2Q04671 838 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 ART3Q13508 389 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 NFYCQ13952 458 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 SERTAD2Q14140 314 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 ERV3-1Q14264 604 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 NKG7Q16617 165 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 KIF26BQ2KJY2 2108 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 LCN10Q6JVE6 187 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 C6orf15Q6UXA7 325 aaPredicted RBP13.38□□□□□ -0.27
SF3B1-204ENST00000414963 RINLQ6ZS11 566 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 ANKRD46Q86W74 232 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 CLECL1Q8IZS7 167 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 LRRC25Q8N386 305 aaPredicted RBP13.38□□□□□ -0.27
SF3B1-204ENST00000414963 GALNT6Q8NCL4 622 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 RBM15BQ8NDT2 890 aaKnown RBP13.38□□□□□ -0.27
SF3B1-204ENST00000414963 PLPP5Q8NEB5 264 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 ZFP28Q8NHY6 868 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 FBXO27Q8NI29 283 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 SUN3Q8TAQ9 357 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 STT3BQ8TCJ2 826 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 LRRC58Q96CX6 371 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 PANX1Q96RD7 426 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 BTBD10Q9BSF8 475 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 TRIM4Q9C037 500 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 NRSN2Q9GZP1 204 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 GLIPR2Q9H4G4 154 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 AKIRIN1Q9H9L7 192 aaPredicted RBP13.38□□□□□ -0.27
SF3B1-204ENST00000414963 TAS2R9Q9NYW1 312 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 FOXJ2Q9P0K8 574 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 SLAMF8Q9P0V8 285 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 CTSFQ9UBX1 484 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 NXT1Q9UKK6 140 aaKnown RBP13.38□□□□□ -0.27
SF3B1-204ENST00000414963 PADI1Q9ULC6 663 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 PCDHGB4Q9UN71 923 aa13.38□□□□□ -0.27
SF3B1-204ENST00000414963 CDRT15L2A8MXV6 281 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.37□□□□□ -0.27
SF3B1-204ENST00000414963 TGFBR3LH3BV60 316 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 LDB3O75112 727 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 DXOO77932 396 aaKnown RBP13.37□□□□□ -0.27
SF3B1-204ENST00000414963 SLITRK5O94991 958 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 C6orf47O95873 294 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 CCNYL3P0C7X3 344 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 FEN1P39748 380 aaKnown RBP13.37□□□□□ -0.27
SF3B1-204ENST00000414963 CDKN2CP42773 168 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 NCBP2P52298 156 aaKnown RBP eCLIP13.37□□□□□ -0.273e-13■■□□□ 12.1
SF3B1-204ENST00000414963 NCALDP61601 193 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 GABREP78334 506 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 BTG2P78543 158 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 DUSP2Q05923 314 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 SLC13A2Q13183 592 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 CAMK2BQ13554 666 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 ZNF750Q32MQ0 723 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 VWA2Q5GFL6 755 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 C6orf10Q5SRN2 563 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 FAM180BQ6P0A1 224 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 FAM198BQ6UWH4 519 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 ASRGL1Q7L266 308 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 TIPARPQ7Z3E1 657 aaKnown RBP13.37□□□□□ -0.27
SF3B1-204ENST00000414963 DHDDSQ86SQ9 333 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 OR4N5Q8IXE1 308 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 CCDC116Q8IYX3 515 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 PGAM4Q8N0Y7 254 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 MR1Q95460 341 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 CGREF1Q99674 301 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 RBCK1Q9BYM8 510 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 CHST8Q9H2A9 424 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 LRMDAQ9H2I8 198 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 NEUROD4Q9HD90 331 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 NECTIN3Q9NQS3 549 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.37□□□□□ -0.271e-9■■□□□ 13.3
SF3B1-204ENST00000414963 NTMQ9P121 344 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 CROTQ9UKG9 612 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 ACSL6Q9UKU0 697 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 PCDHB14Q9Y5E9 798 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 SPEGQ15772 3267 aa13.37□□□□□ -0.27
SF3B1-204ENST00000414963 A0A1W2PS29 197 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 C9J4A7 227 aa13.36□□□□□ -0.27
SF3B1-204ENST00000414963 PLOD2O00469 737 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms