RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PLA2R1Q13018 1463 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 GGT3PA6NGU5 568 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 HLA-HP01893 362 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 UBBP0CG47 229 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 UBCP0CG48 685 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 PBX2P40425 430 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 RPS27AP62979 156 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 UBA52P62987 128 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 C22orf42Q6IC83 251 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 B3GLCTQ6Y288 498 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 SERPINA12Q8IW75 414 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 ISCA1Q9BUE6 129 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 CNTNAP3Q9BZ76 1288 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 OR52A5Q9H2C5 316 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 MSI1O43347 362 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 SNRNP70P08621 437 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 FNDC8Q8TC99 324 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 NUP214P35658 2090 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 A8MUA0 341 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 CLDN5O00501 218 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 UBFD1O14562 309 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF780AO75290 641 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 SOX2P48431 317 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 GALEQ14376 348 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 ARHGAP40Q5TG30 622 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 REEP3Q6NUK4 255 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 DFNA5O60443 496 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 UBE2KP61086 200 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 CYBRD1Q53TN4 286 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 C6orf120Q7Z4R8 191 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 LIX1LQ8IVB5 337 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 OR51G2Q8NGK0 314 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 OR51Q1Q8NH59 317 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 ZFAND2BQ8WV99 257 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 SORCS1Q8WY21 1168 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 PLD4Q96BZ4 506 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC25A51Q9H1U9 297 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 LGALS13Q9UHV8 139 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 RFPL3O75679 317 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 HNRNPFP52597 415 aaKnown RBP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 SLBPQ14493 270 aaKnown RBP eCLIP12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 FLYWCH1Q4VC44 716 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 TMEM126BQ8IUX1 230 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 ZNF100Q8IYN0 542 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 TXNDC15Q96J42 360 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 UHRF2Q96PU4 802 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 TGIF2Q9GZN2 237 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 PCDHA2Q9Y5H9 948 aa12.83□□□□□ -0.36
CCDC88A-204ENST00000413716 K7EPI3 171 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC1A7O00341 560 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 CAPN15O75808 1086 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 MAS1P04201 325 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SERPINE2P07093 398 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 FPR1P21462 350 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 TTPALQ9BTX7 342 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 OR11A1Q9GZK7 315 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 YDJCA8MPS7 323 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 DVL1O14640 695 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ERI3O43414 337 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ONECUT3O60422 494 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 B3GALNT1O75752 331 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 CELP19835 753 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 DVL1P1P54792 670 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 PMS2P3Q13401 168 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC27A4Q6P1M0 643 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 FUT10Q6P4F1 479 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 TOP6BLQ8N6T0 577 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 FAM84AQ96KN4 292 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 EIF2B3Q9NR50 452 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 TXNL4BQ9NX01 149 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 WASH4PA8MWX3 477 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 CYTIPO60759 359 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 HLA-DOBP13765 273 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 DCUN1D3Q8IWE4 304 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ADAMTS10Q9H324 1103 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 RFC2P35250 354 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 GGT2P36268 569 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 MZT1Q08AG7 82 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 OTOP1Q7RTM1 612 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 OR2A12Q8NGT7 310 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 ARHGAP9Q9BRR9 750 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 RPF2Q9H7B2 306 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 MKS1Q9NXB0 559 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 TAS2R16Q9NYV7 291 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SLITRK3O94933 977 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SNRPD2P62316 118 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SGCAQ16586 387 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 C6orf141Q5SZD1 244 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SNX27Q96L92 541 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 PELOQ9BRX2 385 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 TSPAN11A1L157 253 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 UNC119BA6NIH7 251 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 MSCO60682 206 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 GABRR2P28476 465 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 PITPNBP48739 271 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SLC18B1Q6NT16 456 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 SMPDL3AQ92484 453 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 RDH12Q96NR8 316 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 DCDC2BA2VCK2 349 aa12.82□□□□□ -0.36
CCDC88A-204ENST00000413716 H0YAE9 185 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms