RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 BTBD3Q9Y2F9 522 aa9.79□□□□□ -0.84
COL6A3-205ENST00000392004 GPC6Q9Y625 555 aaPredicted RBP9.79□□□□□ -0.84
COL6A3-205ENST00000392004 BMP2P12643 396 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 MYF6P23409 242 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 EMP2P54851 167 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ITGA1P56199 1179 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF750Q32MQ0 723 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 RABL3Q5HYI8 236 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ALG1LQ6GMV1 187 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 BHLHB9Q6PI77 547 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 CHMP1BQ7LBR1 199 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 GHDCQ8N2G8 530 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 C19orf47Q8N9M1 422 aaKnown RBP9.78□□□□□ -0.84
COL6A3-205ENST00000392004 OR4K14Q8NGD5 310 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 TBC1D15Q8TC07 691 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 C8orf44Q96CB5 159 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 C3orf30Q96M34 536 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 NPLQ9BXD5 320 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-205ENST00000392004 INIPQ9NRY2 104 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 TMEM184CQ9NVA4 438 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 TMEM9Q9P0T7 183 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 XIRP2A4UGR9 3374 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF318Q5VUA4 2279 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 TEX51A0A1B0GUA7 166 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 TCRBV3S1A0A5B6 114 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 PRORSD1PA6NEY8 169 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 H3BN98 237 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 CAPNS1P04632 268 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 FCGR1AP12314 374 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 NPPBP16860 134 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 NOS3P29474 1203 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 RPS15AP62244 130 aaKnown RBP9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ABATP80404 500 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 PRR5P85299 388 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 PMS2P3Q13401 168 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 NHSL2Q5HYW2 709 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 PMS2CLQ68D20 193 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 FCRLBQ6BAA4 426 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ACOT4Q8N9L9 421 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 SCAIQ8N9R8 606 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 NLGN4YQ8NFZ3 816 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-205ENST00000392004 OR2T12Q8NG77 320 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 UTP15Q8TED0 518 aaKnown RBP9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF556Q9HAH1 456 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 OR5K3A6NET4 321 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 SDHDO14521 159 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 SCO2O43819 266 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 SLCO2B1O94956 709 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ALBP02768 609 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 PGRP06401 933 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 MAGEA12P43365 314 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 EEF1A2Q05639 463 aaKnown RBP9.78□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF763Q0D2J5 394 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 GPR153Q6NV75 609 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 OFCC1Q8IZS5 231 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 UBXN10Q96LJ8 280 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 SLC35A5Q9BS91 424 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 PRRG4Q9BZD6 226 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 DUSP15Q9H1R2 295 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-205ENST00000392004 GSTO2Q9H4Y5 243 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 GPN2Q9H9Y4 310 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-205ENST00000392004 TRPV5Q9NQA5 729 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 KLHL1Q9NR64 748 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 C3orf18Q9UK00 162 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 TMCC3Q9ULS5 477 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 SLC17A4Q9Y2C5 497 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 SLC9A8Q9Y2E8 581 aa9.78□□□□□ -0.84
COL6A3-205ENST00000392004 OPN1LWP04000 364 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 FUCA1P04066 466 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 PRPS2P11908 318 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 TACR1P25103 407 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 EPHA8P29322 1005 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 BMXP51813 675 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 RPS7P62081 194 aaKnown RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 HSD11B2P80365 405 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 KCNAB2Q13303 367 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 DCAF12Q5T6F0 453 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 ANXA8L1Q5VT79 327 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CDC73Q6P1J9 531 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 LINC00696Q6ZRV3 163 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 KIAA0907Q7Z7F0 614 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CLEC14AQ86T13 490 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 PDPRQ8NCN5 879 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 ISL2Q96A47 359 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CUTCQ9NTM9 273 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 KLRF1Q9NZS2 232 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 GTF2A1LQ9UNN4 478 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 ICKQ9UPZ9 632 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 FNDC1Q4ZHG4 1894 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 A0A1B0GTL3 188 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 GPR89AB7ZAQ6 455 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 GNAO1P09471 354 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 GPR89BP0CG08 455 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF182P17025 639 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 RXRGP48443 463 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 CCT3P49368 545 aaKnown RBP9.77□□□□□ -0.85
COL6A3-205ENST00000392004 SLC14A2Q15849 920 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 SPIN4Q56A73 249 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 LIPJQ5W064 366 aa9.77□□□□□ -0.85
COL6A3-205ENST00000392004 PRMT9Q6P2P2 845 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms