RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 RGS13O14921 159 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SPINT1O43278 529 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SLC35G4P0C7Q5 338 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 MANFP55145 182 aaKnown RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 LSM3P62310 102 aaKnown RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 CYP4F2P78329 520 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 CCINQ13939 588 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 CLCA4Q14CN2 919 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 HEPACAMQ14CZ8 416 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SLC5A12Q1EHB4 618 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF605Q86T29 641 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SLC9B2Q86UD5 537 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 PLD3Q8IV08 490 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF547Q8IVP9 402 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ANKRD53Q8N9V6 530 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ABHD11Q8NFV4 315 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 FCGR1BQ92637 280 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 FKBP10Q96AY3 582 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 HRASLS5Q96KN8 279 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 FAM129BQ96TA1 746 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 CSF3RQ99062 836 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SPNS1Q9H2V7 528 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 NECTIN3Q9NQS3 549 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 TAC3Q9UHF0 121 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 DAPK2Q9UIK4 370 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF451Q9Y4E5 1061 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 OTOL1A6NHN0 477 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ARAFP10398 606 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 TNFRSF1BP20333 461 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 EPHA2P29317 976 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 GJA4P35212 333 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SEC13P55735 322 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 DNASE1L3Q13609 305 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 RAB30Q15771 203 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SMN1Q16637 294 aaKnown RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ZNF658BQ4V348 819 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ADCK2Q7Z695 626 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 PARP8Q8N3A8 854 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 CADM2Q8N3J6 435 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SLC5A8Q8N695 610 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SLC15A4Q8N697 577 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 PHF10Q8WUB8 498 aaKnown RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 S100ZQ8WXG8 99 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 COPS4Q9BT78 406 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 OR52A5Q9H2C5 316 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 PELI2Q9HAT8 420 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ACAD8Q9UKU7 415 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 DUSP12Q9UNI6 340 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 WBP11Q9Y2W2 641 aaKnown RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 CENPBD1B2RD01 187 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 CLDN25C9JDP6 229 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 GABARAPO95166 117 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 NADKO95544 446 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 IFNW1P05000 195 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SERPINB1P30740 379 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 CCR8P51685 355 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 TAGLNQ01995 201 aaKnown RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ARHGAP19Q14CB8 494 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ZMYND11Q15326 602 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 FAM83HQ6ZRV2 1179 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SLC16A12Q6ZSM3 486 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SLC44A2Q8IWA5 706 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 ARL6IP6Q8N6S5 226 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 OR5P2Q8WZ92 322 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SMPDL3AQ92484 453 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 DEPDC7Q96QD5 511 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 TRMT61BQ9BVS5 477 aaKnown RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 GABARAPL3Q9BY60 117 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 WDR12Q9GZL7 423 aaKnown RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 SLC6A16Q9GZN6 736 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 LMAN2LQ9H0V9 348 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 C1GALT1Q9NS00 363 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 MAT2BQ9NZL9 334 aa9.18□□□□□ -0.94
COL6A3-204ENST00000392003 PNMA8BQ9ULN7 279 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-204ENST00000392003 TRBC2A0A5B9 178 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 PDPK1O15530 556 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 GADD45GO95257 159 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 SERPIND1P05546 499 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 POU2F2P09086 479 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 GGT2P36268 569 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 IL12RB1P42701 662 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 COPZ1P61923 177 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 KRT33BQ14525 404 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 MICAQ29983 383 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 EXOC3L2Q2M3D2 409 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 SYT6Q5T7P8 510 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-204ENST00000392003 NDUFAF5Q5TEU4 345 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 KHDRBS2Q5VWX1 349 aaKnown RBP9.17□□□□□ -0.94
COL6A3-204ENST00000392003 REEP3Q6NUK4 255 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 ADAMTSL4Q6UY14 1074 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 SFTPA1Q8IWL2 248 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 LRRC56Q8IYG6 542 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-204ENST00000392003 STX19Q8N4C7 294 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 ANGPTL6Q8NI99 470 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 ACOT13Q9NPJ3 140 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 TIGARQ9NQ88 270 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 THSD1Q9NS62 852 aa9.17□□□□□ -0.94
COL6A3-204ENST00000392003 CFAP20Q9Y6A4 193 aaKnown RBP9.17□□□□□ -0.94
COL6A3-204ENST00000392003 CAPN5O15484 640 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms