RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 IKZF3Q9UKT9 509 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 CHCHD2Q9Y6H1 151 aaPredicted RBP12.71□□□□□ -0.37
VPS29-201ENST00000360579 IKBKGQ9Y6K9 419 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 COL6A5A8TX70 2615 aa12.71□□□□□ -0.38
VPS29-201ENST00000360579 ARHGAP21Q5T5U3 1957 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 MBD3L4A6NDZ8 208 aaPredicted RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 MBD3L3A6NE82 208 aaPredicted RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 MBD3L5A6NJ08 208 aaPredicted RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 CDC7O00311 574 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 TBX6O95947 436 aaPredicted RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 WNT3P56703 355 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 PPP2R2BQ00005 443 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 PLIN5Q00G26 463 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 LYPD8Q6UX82 237 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 CAPN12Q6ZSI9 719 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 SYDE1Q6ZW31 735 aaPredicted RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 CXXC5Q7LFL8 322 aaKnown RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 SLC29A4Q7RTT9 530 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 VN1R5Q7Z5H4 357 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 CXorf67Q86X51 503 aaPredicted RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 OR10G3Q8NGC4 313 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 MBD3L2Q8NHZ7 208 aaPredicted RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 PIGTQ969N2 578 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 NTNG2Q96CW9 530 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 KCTD12Q96CX2 325 aaKnown RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 FBXL20Q96IG2 436 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 PIP5K1AQ99755 562 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 BDH2Q9BUT1 245 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 CNOT10Q9H9A5 744 aaKnown RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 CALHM2Q9HA72 323 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 PROK2Q9HC23 129 aa12.7□□□□□ -0.38
VPS29-201ENST00000360579 CNOT11Q9UKZ1 510 aaKnown RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 EIF3LQ9Y262 564 aaKnown RBP12.7□□□□□ -0.38
VPS29-201ENST00000360579 HIVEP2P31629 2446 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 STAB1Q9NY15 2570 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 NPEPPSL1A6NEC2 478 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 CAPN14A8MX76 684 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 TP53I11O14683 189 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 CASKO14936 926 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 CLGNO14967 610 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 SMPD2O60906 423 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 TRIM3O75382 744 aaPredicted RBP12.69□□□□□ -0.38
VPS29-201ENST00000360579 ERN1O75460 977 aaKnown RBP12.69□□□□□ -0.38
VPS29-201ENST00000360579 TRAPPC6AO75865 159 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 HPNP05981 417 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 CPN2P22792 545 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 PCSK6P29122 969 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 CXCR5P32302 372 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 GDF5P43026 501 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 PGGT1BP53609 377 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 IGLV3-21P80748 117 aaPredicted RBP12.69□□□□□ -0.38
VPS29-201ENST00000360579 ID2Q02363 134 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 LAPTM5Q13571 262 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 RCAN2Q14206 197 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 POU4F3Q15319 338 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 NTRK2Q16620 822 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 NHSL2Q5HYW2 709 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 PAGE2BQ5JRK9 111 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 TEDDM1Q5T9Z0 273 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 VASNQ6EMK4 673 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 CCDC137Q6PK04 289 aaKnown RBP12.69□□□□□ -0.38
VPS29-201ENST00000360579 PRSS57Q6UWY2 283 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 TAGAPQ8N103 731 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 TCAIMQ8N3R3 496 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 ACOT4Q8N9L9 421 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 TRIM58Q8NG06 486 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 ZNF592Q92610 1267 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 DIO2Q92813 273 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 ANKRD9Q96BM1 317 aaPredicted RBP12.69□□□□□ -0.38
VPS29-201ENST00000360579 RHBDF1Q96CC6 855 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 PTCD3Q96EY7 689 aaKnown RBP12.69□□□□□ -0.38
VPS29-201ENST00000360579 F2RL3Q96RI0 385 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 GAL3ST4Q96RP7 486 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 TRIB1Q96RU8 372 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 MAPKAP1Q9BPZ7 522 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 EFCAB11Q9BUY7 163 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 RBM24Q9BX46 236 aaKnown RBP12.69□□□□□ -0.38
VPS29-201ENST00000360579 CTNNAL1Q9UBT7 734 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 CAMK2AQ9UQM7 478 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 ATRQ13535 2644 aa12.69□□□□□ -0.38
VPS29-201ENST00000360579 MPDZO75970 2070 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 IQANK1A0A1B0GTG1 560 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 SH3D21A4FU49 640 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 OR6C76A6NM76 312 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 KDM4EB2RXH2 506 aaPredicted RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 H7C1Q1 480 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 FGF17O60258 216 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 SCELO95171 688 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 SNX4O95219 450 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 HIST1H1TP22492 207 aaPredicted RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 ATP5A1P25705 553 aaKnown RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 CPA2P48052 419 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 CDK9P50750 372 aaKnown RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 HIST2H2ACQ16777 129 aaPredicted RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 AP5B1Q2VPB7 878 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 TMEM35AQ53FP2 167 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 RNASEH2BQ5TBB1 312 aaKnown RBP12.68□□□□□ -0.38
VPS29-201ENST00000360579 HIST2H2AA3Q6FI13 130 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 PACS2Q86VP3 889 aa12.68□□□□□ -0.38
VPS29-201ENST00000360579 BBOF1Q8ND07 529 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms