RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 LUZP2Q86TE4 346 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 GTF2IRD2Q86UP8 949 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 TRIM69Q86WT6 500 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 GPR151Q8TDV0 419 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 USP7Q93009 1102 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 SLC35G5Q96KT7 338 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 TMEM175Q9BSA9 504 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 IFT52Q9Y366 437 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 AP3D1O14617 1153 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 KLK8O60259 260 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 SLC35A2P78381 396 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 BCL7AQ4VC05 210 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 ZNF805Q5CZA5 627 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 CCNJQ5T5M9 372 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 ELMOD2Q8IZ81 293 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 HDDC3Q8N4P3 179 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 RAB42Q8N4Z0 105 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 TEX47Q8TBZ9 253 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 GEMIN6Q8WXD5 167 aaKnown RBP11.37□□□□□ -0.59
USP1-201ENST00000339950 C16orf58Q96GQ5 468 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 ZNF607Q96SK3 696 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 WACQ9BTA9 647 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 UCK2Q9BZX2 261 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 RSPH9Q9H1X1 276 aaPredicted RBP11.37□□□□□ -0.59
USP1-201ENST00000339950 CXorf36Q9H7Y0 433 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 AP3M1Q9Y2T2 418 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 PCDHGA6Q9Y5G7 932 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 CLCA1A8K7I4 914 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 AQP9O43315 295 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 PRKNO60260 465 aaPredicted RBP11.37□□□□□ -0.59
USP1-201ENST00000339950 GRK5P34947 590 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 PNLIPRP1P54315 467 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 QPRTQ15274 297 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 ANGPT1Q15389 498 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 DHCR24Q15392 516 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 SPATS1Q496A3 300 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 SLC16A12Q6ZSM3 486 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 USP43Q70EL4 1123 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 LAPTM4BQ86VI4 370 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 OR10H4Q8NGA5 316 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 OR6Q1Q8NGQ2 317 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 LMLNQ96KR4 655 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 IL21Q9HBE4 155 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 BACE2Q9Y5Z0 518 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 PRUNE2Q8WUY3 3088 aa11.37□□□□□ -0.59
USP1-201ENST00000339950 PSMD9O00233 223 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 SMAD9O15198 467 aaKnown RBP11.36□□□□□ -0.59
USP1-201ENST00000339950 PI15O43692 258 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 ADORA3P0DMS8 318 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 ADH5P11766 374 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 SLC9A3P48764 834 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 CRISP1P54107 249 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 HEPACAMQ14CZ8 416 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 SPIN4Q56A73 249 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 PLEKHS1Q5SXH7 462 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 REEP3Q6NUK4 255 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 HDDC2Q7Z4H3 204 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 OR51G2Q8NGK0 314 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 ADAMTS15Q8TE58 950 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 ADAMTS19Q8TE59 1207 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 PDLIM5Q96HC4 596 aaKnown RBP11.36□□□□□ -0.59
USP1-201ENST00000339950 POFUT2Q9Y2G5 429 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 CSNK1G3Q9Y6M4 447 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 H7C0S8 307 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 RPS3P23396 243 aaKnown RBP eCLIP11.36□□□□□ -0.59
USP1-201ENST00000339950 CHMP24386 653 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 BTN3A2P78410 334 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 LRRC32Q14392 662 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 LIPJQ5W064 366 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 CCSAPQ6IQ19 270 aaPredicted RBP11.36□□□□□ -0.59
USP1-201ENST00000339950 DHRS4L2Q6PKH6 230 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 ARL9Q6T311 187 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 IL20RBQ6UXL0 311 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 PRSS48Q7RTY5 328 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 NRARPQ7Z6K4 114 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 CADM2Q8N3J6 435 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 PARP16Q8N5Y8 322 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 CYB561A3Q8NBI2 242 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 OR51A7Q8NH64 312 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 NXPE3Q969Y0 559 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 NEDD4LQ96PU5 975 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 OR51I1Q9H343 314 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 EGLN3Q9H6Z9 239 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 TRIM45Q9H8W5 580 aaPredicted RBP11.36□□□□□ -0.59
USP1-201ENST00000339950 HSPB11Q9Y547 144 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 CLDN24A6NM45 220 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 SULT1C4O75897 302 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 CPN2P22792 545 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 PPIBP23284 216 aaKnown RBP11.36□□□□□ -0.59
USP1-201ENST00000339950 SIM1P81133 766 aaPredicted RBP11.36□□□□□ -0.59
USP1-201ENST00000339950 TAP2Q03519 686 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 GPNMBQ14956 572 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 PROX2Q3B8N5 592 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 SNAP47Q5SQN1 464 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 IDNKQ5T6J7 187 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 TMEM215Q68D42 235 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 LAX1Q8IWV1 398 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 METTL27Q8N6F8 245 aaPredicted RBP11.36□□□□□ -0.59
USP1-201ENST00000339950 AMER3Q8N944 861 aa11.36□□□□□ -0.59
USP1-201ENST00000339950 ISG20Q96AZ6 181 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms