RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PAX7P23759 505 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PGDP52209 483 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 KLHL22Q53GT1 634 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 DUS1LQ6P1R4 473 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 RPS27LQ71UM5 84 aaKnown RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 EPHX4Q8IUS5 362 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 OR13H1Q8NG92 308 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 GTF2H4Q92759 462 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM125Q96AQ2 219 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PYURFQ96I23 114 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 RBP7Q96R05 134 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 PRRX2Q99811 253 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 DPH2Q9BQC3 489 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-201ENST00000335508 TESMINQ9Y4I5 508 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 MMACHCQ9Y4U1 282 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 SPTBP11277 2137 aa6.54□□□□□ -1.36
SF3B1-201ENST00000335508 FASNP49327 2511 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 A0A0G2JPF8 293 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 FAM149AA5PLN7 773 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 OR5K3A6NET4 321 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 HNRNPCL3B7ZW38 293 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 KLHL18O94889 574 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CCDC159P0C7I6 412 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 HNRNPCL4P0DMR1 293 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 GPX2P18283 190 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PEX2P28328 305 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PRDX3P30048 256 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ELOAQ14241 798 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 RNF111Q6ZNA4 994 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 FAM220AQ7Z4H9 259 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 LUZP2Q86TE4 346 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 C16orf78Q8WTQ4 265 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 NODALQ96S42 347 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 MAP10Q9P2G4 905 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 OAZ3Q9UMX2 235 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 SLC17A4Q9Y2C5 497 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CHST10O43529 356 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 SERPINI2O75830 405 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 KRT8P05787 483 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 HSMCR30P0CW71 290 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PRG2P13727 222 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CAPGP40121 348 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 FOLH1Q04609 750 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 NSDHLQ15738 373 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 C14orf28Q4W4Y0 310 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 MEDAGQ5VYS4 303 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ASRGL1Q7L266 308 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 OR4K17Q8NGC6 315 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 VANGL1Q8TAA9 524 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 IPCEF1Q8WWN9 437 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 MR1Q95460 341 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PPP1R14BQ96C90 147 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PRSS21Q9Y6M0 314 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 A0A1B0GVT2 93 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 SCAMP2O15127 329 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 RGS5O15539 181 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PFDN1O60925 122 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 HMGN2P05204 90 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CHRM5P08912 532 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PKLRP30613 574 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 FEN1P39748 380 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CCR10P46092 362 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ALDH3A2P51648 485 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 AGERQ15109 404 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ASTLQ6HA08 431 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ABHD17CQ6PCB6 329 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 RFLNAQ6ZTI6 216 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 SH2D5Q6ZV89 423 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PTCHD4Q6ZW05 846 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 RAB43Q86YS6 212 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CLVS1Q8IUQ0 354 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 MAFAQ8NHW3 353 aaPredicted RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ITFG2Q969R8 447 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 HSH2DQ96JZ2 352 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 MS4A4EQ96PG1 132 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CRB3Q9BUF7 120 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM168Q9H0V1 697 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 RERGLQ9H628 205 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 MED13LQ71F56 2210 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PLRG1O43660 514 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 HCN1O60741 890 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PRAMEF2O60811 474 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CSTAP01040 98 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 GABRG2P18507 467 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 RORAP35398 523 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 GMPRP36959 345 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CENPAP49450 140 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 OR4D2P58180 307 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 MERTKQ12866 999 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 TMED1Q13445 227 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 CAMK1Q14012 370 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 PPP1R3AQ16821 1122 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 XKR7Q5GH72 579 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 BMP8AQ7Z5Y6 402 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 ARL14Q8N4G2 192 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 FAM98AQ8NCA5 519 aaKnown RBP6.53□□□□□ -1.36
SF3B1-201ENST00000335508 MAGIXQ9H6Y5 334 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 SATB2Q9UPW6 733 aa6.53□□□□□ -1.36
SF3B1-201ENST00000335508 GREB1LQ9C091 1923 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms