RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 OTUB1Q96FW1 271 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-201ENST00000328923 PPP3R2Q96LZ3 170 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 SSX3Q99909 188 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 MID1IP1Q9NPA3 183 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 NUDT15Q9NV35 164 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 UBP1Q9NZI7 540 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 EIF2B4Q9UI10 523 aaKnown RBP11.31□□□□□ -0.6
SHMT2-201ENST00000328923 PTCH2Q9Y6C5 1203 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 MEIKINA0A087WXM9 373 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 LRRC14BA6NHZ5 514 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 WASH4PA8MWX3 477 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 FAM72CH0Y354 149 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 SDC3O75056 442 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 AKR7A3O95154 331 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 GLUD1P00367 558 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 JCHAINP01591 159 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 ADORA2BP29275 332 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 SLC6A1P30531 599 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 ADRA1AP35348 466 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 RORAP35398 523 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 RNF144AP50876 292 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-201ENST00000328923 GEMP55040 296 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 PITX1P78337 314 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-201ENST00000328923 RPP30P78346 268 aaKnown RBP11.31□□□□□ -0.6
SHMT2-201ENST00000328923 RAB33AQ14088 237 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 GRIN2CQ14957 1233 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 ATP6AP1LQ52LC2 224 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 TEX30Q5JUR7 227 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 AVPI1Q5T686 147 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 FAM72AQ5TYM5 149 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 HECTD2Q5U5R9 776 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 FAM171A1Q5VUB5 890 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 SPRYD7Q5W111 196 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 FAM72DQ6L9T8 149 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 MILR1Q7Z6M3 343 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 DDX53Q86TM3 631 aaKnown RBP11.31□□□□□ -0.6
SHMT2-201ENST00000328923 FAM72BQ86X60 149 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 ZDHHC21Q8IVQ6 265 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 SLC43A2Q8N370 569 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 ZNF527Q8NB42 609 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 BPIFCQ8NFQ6 507 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 OR6B3Q8NGW1 331 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 OR14A16Q8NHC5 309 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 ZNF707Q96C28 371 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-201ENST00000328923 POM121Q96HA1 1249 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 HS6ST2Q96MM7 605 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 DDOQ99489 341 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 NEU1Q99519 415 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 KATNBL1Q9H079 304 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 IKZF5Q9H5V7 419 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 RERGLQ9H628 205 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 AGO3Q9H9G7 860 aaKnown RBP11.31□□□□□ -0.6
SHMT2-201ENST00000328923 COMMD3Q9UBI1 195 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 SCP2D1Q9UJQ7 156 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 HCN2Q9UL51 889 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 DMRT1Q9Y5R6 373 aa11.31□□□□□ -0.6
SHMT2-201ENST00000328923 A0A087WZ62 844 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 TMEM200CA6NKL6 621 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 PRSS47A8MTI9 375 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 C22orf31O95567 290 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 LGALS2P05162 132 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 GP1BAP07359 652 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 ZNF8P17098 575 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-201ENST00000328923 DDX6P26196 483 aaKnown RBP eCLIP11.3□□□□□ -0.63e-6■□□□□ 9.6
SHMT2-201ENST00000328923 GPR143P51810 404 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 C21orf58P58505 322 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 CAMK2GQ13555 558 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-201ENST00000328923 PLA1AQ53H76 456 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 IKBIPQ70UQ0 350 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 ZNF467Q7Z7K2 595 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-201ENST00000328923 BEST4Q8NFU0 473 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 PPTC7Q8NI37 304 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 EXT2Q93063 718 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 ELMOD3Q96FG2 381 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 LURAP1Q96LR2 239 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 BBS4Q96RK4 519 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 ALG9Q9H6U8 611 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 ANKRA2Q9H9E1 313 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 DCAF13Q9NV06 445 aaKnown RBP11.3□□□□□ -0.6
SHMT2-201ENST00000328923 SLC2A6Q9UGQ3 507 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 SLC9A8Q9Y2E8 581 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 MIA3Q5JRA6 1907 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 TRBV23OR9-2A0A075B6M9 112 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 A0A1B0GVI7 797 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 METTL21EPA6NDL7 271 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 TREHO43280 583 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 SNAI1O95863 264 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-201ENST00000328923 INSRRP14616 1297 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 HOXB8P17481 243 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-201ENST00000328923 CD53P19397 219 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 ADCYAP1R1P41586 468 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 CAV3P56539 151 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 ADIGQ0VDE8 80 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 CRTC1Q6UUV9 634 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 ASB18Q6ZVZ8 466 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 PDZD3Q86UT5 571 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 CARFQ8N187 725 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 B3GNT7Q8NFL0 401 aa11.3□□□□□ -0.6
SHMT2-201ENST00000328923 TRMT10AQ8TBZ6 339 aaKnown RBP11.3□□□□□ -0.6
SHMT2-201ENST00000328923 RXFP4Q8TDU9 374 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms