RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 ANKK1Q8NFD2 765 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 CPEB1Q9BZB8 566 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 MCOLN1Q9GZU1 580 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 RACGAP1Q9H0H5 632 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 TRAV19A0A0A6YYK7 116 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 SEC14L5O43304 696 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 OR10H3O60404 316 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 TMCC2O75069 709 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 OLFM2O95897 454 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 SRPRAP08240 638 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 PDHA2P29803 388 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 ETV3P41162 512 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 GZMKP49863 264 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 RPS26P62854 115 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 FLYWCH1Q4VC44 716 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 REEP3Q6NUK4 255 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 TCTN3Q6NUS6 607 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 CASP12Q6UXS9 341 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 CEACAM20Q6UY09 585 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 GLRX5Q86SX6 157 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 GPR32P1Q8NGA4 272 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 BTN2A2Q8WVV5 523 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 DIRAS2Q96HU8 199 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 MSLNLQ96KJ4 702 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 MRPL9Q9BYD2 267 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 NARFLQ9H6Q4 476 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 GPBP1L1Q9HC44 474 aaPredicted RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 GULP1Q9UBP9 304 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 TMCC3Q9ULS5 477 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 HS3ST2Q9Y278 367 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 TMEM88BA6NKF7 163 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 POP4O95707 220 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 IL1AP01583 271 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 KLK1P06870 262 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 CYP2A6P11509 494 aaPredicted RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 NPPBP16860 134 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 ELAVL4P26378 380 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 ERP29P30040 261 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 HLA-FP30511 346 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 XKP51811 444 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 TSTA3Q13630 321 aaPredicted RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 SLBPQ14493 270 aaKnown RBP eCLIP12.78□□□□□ -0.36
SKA3-202ENST00000314759 LAMTOR1Q6IAA8 161 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 C22orf42Q6IC83 251 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 TMIGD1Q6UXZ0 262 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 RBM45Q8IUH3 476 aaKnown RBP12.78□□□□□ -0.36
SKA3-202ENST00000314759 CMTM8Q8IZV2 173 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 OR8J1Q8NGP2 316 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 SLC38A5Q8WUX1 472 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 PDXPQ96GD0 296 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 HDHD5Q9BXW7 423 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 SLC6A16Q9GZN6 736 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 MYNNQ9NPC7 610 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 ATP13A2Q9NQ11 1180 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 DMRT3Q9NQL9 472 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 CFAP97Q9P2B7 532 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 SPEF1Q9Y4P9 236 aa12.78□□□□□ -0.36
SKA3-202ENST00000314759 FOXE1O00358 373 aaPredicted RBP12.77□□□□□ -0.36
SKA3-202ENST00000314759 PRRG1O14668 218 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 ZNF197O14709 1029 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 LGI1O95970 557 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 WEE1P30291 646 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 PKLRP30613 574 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 ATN1P54259 1190 aaPredicted RBP12.77□□□□□ -0.36
SKA3-202ENST00000314759 CAP1Q01518 475 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 MEF2AQ02078 507 aaPredicted RBP12.77□□□□□ -0.36
SKA3-202ENST00000314759 TATDN3Q17R31 274 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 MPPE1Q53F39 396 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 DCST1Q5T197 706 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 MPP7Q5T2T1 576 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 PDZK1Q5T2W1 519 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 RNLSQ5VYX0 342 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 USP30Q70CQ3 517 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 RASGEF1AQ8N9B8 481 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 OR9Q1Q8NGQ5 310 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 ZNF480Q8WV37 535 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 LMLNQ96KR4 655 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 WFDC6Q9BQY6 131 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 RIOK2Q9BVS4 552 aaKnown RBP12.77□□□□□ -0.36
SKA3-202ENST00000314759 CXorf36Q9H7Y0 433 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 IL21Q9HBE4 155 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 TEKT2Q9UIF3 430 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 MGAT4BQ9UQ53 548 aa12.77□□□□□ -0.36
SKA3-202ENST00000314759 CASP8AP2Q9UKL3 1982 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 MYL12BO14950 172 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 LRRTM2O43300 516 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 SCO1O75880 301 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 CTSAP10619 480 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 SELPP16109 830 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 TBPL1P62380 186 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 CYP4F8P98187 520 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 C1DQ13901 141 aaKnown RBP12.77□□□□□ -0.37
SKA3-202ENST00000314759 HEPACAMQ14CZ8 416 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 Q6ZVU0 165 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 TCTE3Q8IZS6 198 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 IQCF1Q8N6M8 205 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 CLDN22Q8N7P3 220 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 GDPD1Q8N9F7 314 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 NELL2Q99435 816 aa12.77□□□□□ -0.37
SKA3-202ENST00000314759 POLR2J3Q9H1A7 115 aaKnown RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms