RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MAGEA12P43365 314 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 HERVK_113P63132 956 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 ERVK-8P63133 956 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 CUL3Q13618 768 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 TSNAXIP1Q2TAA8 658 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 TTC19Q6DKK2 380 aaPredicted RBP18.07■□□□□ 0.48
LIME1-201ENST00000309546 GK5Q6ZS86 529 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 FAM47EQ6ZV65 393 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 PHF10Q8WUB8 498 aaKnown RBP18.07■□□□□ 0.48
LIME1-201ENST00000309546 ISL2Q96A47 359 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 NSUN5Q96P11 429 aaKnown RBP18.07■□□□□ 0.48
LIME1-201ENST00000309546 GAL3ST4Q96RP7 486 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 VKORC1Q9BQB6 163 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 ERVK-6Q9BXR3 956 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 WDR41Q9HAD4 459 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 ERVK-19Q9WJR5 959 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 ZNF407Q9C0G0 2248 aa18.07■□□□□ 0.48
LIME1-201ENST00000309546 A0A1W2PR48 441 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 WASHC1A8K0Z3 465 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 TRIM49D1C9J1S8 452 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 PROM1O43490 865 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 FAM58BPP0C7Q3 252 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 ECHS1P30084 290 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 NR0B1P51843 470 aaKnown RBP18.06■□□□□ 0.48
LIME1-201ENST00000309546 ARFIP1P53367 373 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 METTL2BQ6P1Q9 378 aaKnown RBP18.06■□□□□ 0.48
LIME1-201ENST00000309546 ARHGAP11AQ6P4F7 1023 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 ST13P4Q8IZP2 240 aaPredicted RBP18.06■□□□□ 0.48
LIME1-201ENST00000309546 GOLM1Q8NBJ4 401 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 NUBPLQ8TB37 319 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 SLC22A8Q8TCC7 542 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 DMRTA2Q96SC8 542 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 FAM173AQ9BQD7 235 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 PELOQ9BRX2 385 aaKnown RBP18.06■□□□□ 0.48
LIME1-201ENST00000309546 TTTY12Q9BZ98 90 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 DDX31Q9H8H2 851 aaKnown RBP18.06■□□□□ 0.48
LIME1-201ENST00000309546 SEMA4BQ9NPR2 832 aaPredicted RBP18.06■□□□□ 0.48
LIME1-201ENST00000309546 SACM1LQ9NTJ5 587 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.06■□□□□ 0.48
LIME1-201ENST00000309546 PCTPQ9UKL6 214 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 TMCO1Q9UM00 188 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 ASB4Q9Y574 426 aa18.06■□□□□ 0.48
LIME1-201ENST00000309546 A0A087WUV0 522 aaPredicted RBP18.05■□□□□ 0.48
LIME1-201ENST00000309546 STX16-NPEPL1H3BU86 382 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 FOXE1O00358 373 aaPredicted RBP18.05■□□□□ 0.48
LIME1-201ENST00000309546 STX16O14662 325 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 ADAM10O14672 748 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 GPR75O95800 540 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 AIFM1O95831 613 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 IGKV3-11P04433 115 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 P04436 131 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 CCL3P10147 92 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 CNR1P21554 472 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 DNASE1L1P49184 302 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 BIKQ13323 160 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 ZNF267Q14586 743 aaPredicted RBP18.05■□□□□ 0.48
LIME1-201ENST00000309546 MRM1Q6IN84 353 aaKnown RBP18.05■□□□□ 0.48
LIME1-201ENST00000309546 PAOXQ6QHF9 649 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 SLC22A16Q86VW1 577 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 DCAKDQ8WVC6 231 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 SDCCAG3Q96C92 435 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 FBXL20Q96IG2 436 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 SGCZQ96LD1 299 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 SERPINI1Q99574 410 aa18.05■□□□□ 0.48
LIME1-201ENST00000309546 DNAJC13O75165 2243 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 CREBBPQ92793 2442 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 IQANK1A0A1B0GTG1 560 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 C19orf84I3L1E1 186 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 CNTFP26441 200 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 IFT88Q13099 833 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 TRAF3Q13114 568 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 MPEG1Q2M385 716 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 SGO1Q5FBB7 561 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 PIGGQ5H8A4 983 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 FRG2Q64ET8 278 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 OR52E8Q6IFG1 317 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 RNF111Q6ZNA4 994 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 RPS27LQ71UM5 84 aaKnown RBP18.04■□□□□ 0.48
LIME1-201ENST00000309546 SLC29A4Q7RTT9 530 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 GDF7Q7Z4P5 450 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 CA5BP1Q8WTZ4 195 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 RIT1Q92963 219 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 UCN3Q969E3 161 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 FRG2BQ96QU4 278 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 NTMT1Q9BV86 223 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 ZBTB26Q9HCK0 441 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 PLSCR2Q9NRY7 297 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 COQ3Q9NZJ6 369 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 ZNF180Q9UJW8 692 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 LIPGQ9Y5X9 500 aa18.04■□□□□ 0.48
LIME1-201ENST00000309546 PKDREJQ9NTG1 2253 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 EXOC1LA0A1B0GW35 172 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 ENO4A6NNW6 628 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 NPIPA2E9PIF3 369 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 NPIPA3F8WFD2 350 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 SEMA3DO95025 777 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 COL6A2P12110 1019 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 PTGER4P35408 488 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 SPRED3Q2MJR0 410 aa18.03■□□□□ 0.48
LIME1-201ENST00000309546 GLE1Q53GS7 698 aaKnown RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms