RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TNFRSF11BO00300 401 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 PCDHGA12O60330 932 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 EPHA2P29317 976 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 SSTR2P30874 369 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 PTGER3P43115 390 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 DGKEP52429 567 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 STC1P52823 247 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 SPIBQ01892 262 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 TDGQ13569 410 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 HTR4Q13639 388 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 GNA13Q14344 377 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 OR4D1Q15615 310 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 CST6Q15828 149 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 SLC14A2Q15849 920 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 IGSF11Q5DX21 431 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 CPZQ66K79 652 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 CEP68Q76N32 757 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 SLC44A3Q8N4M1 653 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 TMEM159Q96B96 161 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 KCNN2Q9H2S1 579 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 PRKAB1Q9Y478 270 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 COL4A6Q14031 1691 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 PCM1Q15154 2024 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 GREB1Q4ZG55 1949 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 ALPK3Q96L96 1907 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 M0R129 80 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 FABP7O15540 132 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 NIPSNAP2O75323 286 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 KDM4BO94953 1096 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 PCCBP05166 539 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 CDK1P06493 297 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 BPIP17213 487 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 POU3F3P20264 500 aaPredicted RBP10.41□□□□□ -0.74
LSM3-201ENST00000306024 LTBRP36941 435 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 TCEA2Q15560 299 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 GPR33Q49SQ1 333 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 HSD17B12Q53GQ0 312 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 PSAPL1Q6NUJ1 521 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 PARS2Q7L3T8 475 aaKnown RBP10.41□□□□□ -0.74
LSM3-201ENST00000306024 ZNF367Q7RTV3 350 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 LIX1Q8N485 282 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 LHFPL5Q8TAF8 219 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 QRFPRQ96P65 431 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 S1PR5Q9H228 398 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 SLC6A15Q9H2J7 730 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 CARS2Q9HA77 564 aaKnown RBP10.41□□□□□ -0.74
LSM3-201ENST00000306024 GALNT9Q9HCQ5 603 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 TREX1Q9NSU2 369 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 DCAF13Q9NV06 445 aaKnown RBP10.41□□□□□ -0.74
LSM3-201ENST00000306024 WWOXQ9NZC7 414 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 TMCC3Q9ULS5 477 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 PPIEQ9UNP9 301 aaKnown RBP10.41□□□□□ -0.74
LSM3-201ENST00000306024 NAALAD2Q9Y3Q0 740 aa10.41□□□□□ -0.74
LSM3-201ENST00000306024 ZDBF2Q9HCK1 2354 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 TRAV6A0A075B6T7 132 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 H3BN98 237 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 ARHGAP33O14559 1287 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 GPR39O43194 453 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 TOXO94900 526 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 CD1DP15813 335 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 CPN2P22792 545 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 HSF2Q03933 536 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 C2orf80Q0P641 193 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 PAQR3Q6TCH7 311 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 ZNF852Q6ZMS4 543 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 ANKRD53Q8N9V6 530 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 ST8SIA4Q92187 359 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 GTPBP3Q969Y2 492 aaKnown RBP10.4□□□□□ -0.74
LSM3-201ENST00000306024 IL4I1Q96RQ9 567 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 PCDHB1Q9Y5F3 818 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 CDC7O00311 574 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 ESR1P03372 595 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 CISD3P0C7P0 127 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 TIMP2P16035 220 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 MAN2A2P49641 1150 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 CDKN1CP49918 316 aaPredicted RBP10.4□□□□□ -0.74
LSM3-201ENST00000306024 HOXC5Q00444 222 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 HMGCS1Q01581 520 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 LRRC74AQ0VAA2 488 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 CNTN1Q12860 1018 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 SPDYE7PQ495Y7 208 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 VTCN1Q7Z7D3 282 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 RNF130Q86XS8 419 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 ETFBKMTQ8IXQ9 262 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 NKAPQ8N5F7 415 aaKnown RBP10.4□□□□□ -0.74
LSM3-201ENST00000306024 ZNF680Q8NEM1 530 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 ATP6V1C2Q8NEY4 427 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 RPLP0P6Q8NHW5 317 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 CHAC2Q8WUX2 184 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 GGHQ92820 318 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 POP5Q969H6 163 aaKnown RBP10.4□□□□□ -0.74
LSM3-201ENST00000306024 SH3KBP1Q96B97 665 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 NUS1Q96E22 293 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 LINGO1Q96FE5 620 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 SHDQ96IW2 340 aa10.4□□□□□ -0.74
LSM3-201ENST00000306024 THAP10Q9P2Z0 257 aaPredicted RBP10.4□□□□□ -0.74
LSM3-201ENST00000306024 LOC102723532A0A0G2JNH3 316 aa10.4□□□□□ -0.75
LSM3-201ENST00000306024 MAN2B1O00754 1011 aa10.4□□□□□ -0.75
LSM3-201ENST00000306024 OR1I1O60431 355 aa10.4□□□□□ -0.75
LSM3-201ENST00000306024 ADRB3P13945 408 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms