RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CPZQ66K79 652 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 SERPINA11Q86U17 422 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 DOHHQ9BU89 302 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 TCEAL2Q9H3H9 227 aaPredicted RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 BCKDKO14874 412 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 RETP07949 1114 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 CLK1P49759 484 aaKnown RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 NRG3P56975 720 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 NUP107P57740 925 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 HBA1P69905 142 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 VEZF1Q14119 521 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 GBX1Q14549 363 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 C1orf189Q5VU69 101 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 DAZLQ92904 295 aaKnown RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 LRRC61Q9BV99 259 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 USP36Q9P275 1121 aaKnown RBP10.99□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF451Q9Y4E5 1061 aa10.99□□□□□ -0.65
VPS4A-201ENST00000254950 NLRC5Q86WI3 1866 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 DOCK4Q8N1I0 1966 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 LRIT2A6NDA9 550 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 DIRAS1O95057 198 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 AIFM1O95831 613 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 H1F0P07305 194 aaKnown RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 HEXBP07686 556 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 HBQ1P09105 142 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 ITGA1P56199 1179 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF548Q8NEK5 533 aaPredicted RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 TSPAN14Q8NG11 270 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 OR10G2Q8NGC3 310 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 PIGXQ8TBF5 258 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 EZH1Q92800 747 aaPredicted RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 Q96MT0 163 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 EXOSC4Q9NPD3 245 aaKnown RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 CLN6Q9NWW5 311 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 SLC6A14Q9UN76 642 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 PCDHA9Q9Y5H5 950 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 MAU2Q9Y6X3 613 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 CSF2P04141 144 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 PAICSP22234 425 aaKnown RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 CAPGP40121 348 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 CENPAP49450 140 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 CLCN2P51788 898 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 GPLD1P80108 840 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 GANABQ14697 944 aaKnown RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 TLR1Q15399 786 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 FAM71E1Q6IPT2 247 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 PPP4R4Q6NUP7 873 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 THAP5Q7Z6K1 395 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 LGI4Q8N135 537 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF527Q8NB42 609 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 OR9A4Q8NGU2 314 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 MR1Q95460 341 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 SLC24A3Q9HC58 644 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 TEX10Q9NXF1 929 aaPredicted RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 ZNF624Q9P2J8 865 aaPredicted RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 PRAMEF33A0A0G2JMD5 474 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 GABRA3P34903 492 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 ATP6AP1Q15904 470 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 MANEAQ5SRI9 462 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 RIT1Q92963 219 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 MAL2Q969L2 176 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 TM4SF18Q96CE8 201 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 TMEM19Q96HH6 336 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 CPPED1Q9BRF8 314 aaPredicted RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 GRIP2Q9C0E4 1043 aa10.98□□□□□ -0.65
VPS4A-201ENST00000254950 CLK4Q9HAZ1 481 aaKnown RBP10.98□□□□□ -0.65
VPS4A-201ENST00000254950 LAMA3Q16787 3333 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 DNAH12Q6ZR08 3092 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 AK1P00568 194 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 NELFEP18615 380 aaKnown RBP10.97□□□□□ -0.65
VPS4A-201ENST00000254950 MC3RP41968 323 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 CTSKP43235 329 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 BIKQ13323 160 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 C1DQ13901 141 aaKnown RBP10.97□□□□□ -0.65
VPS4A-201ENST00000254950 ADNP2Q6IQ32 1131 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 FBXL6Q8N531 539 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 OR9A2Q8NGT5 310 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 SUN3Q8TAQ9 357 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 GPBAR1Q8TDU6 330 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 DOK4Q8TEW6 326 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 GTPBP3Q969Y2 492 aaKnown RBP10.97□□□□□ -0.65
VPS4A-201ENST00000254950 SCHIP1Q9P0W5 487 aaPredicted RBP10.97□□□□□ -0.65
VPS4A-201ENST00000254950 KNTC1P50748 2209 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 SPAG17Q6Q759 2223 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 SPINT1O43278 529 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 CHST10O43529 356 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 TPST2O60704 377 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 GPR75O95800 540 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 RPS6KA3P51812 740 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 HSD11B2P80365 405 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 MYBPC3Q14896 1274 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 NEDD8Q15843 81 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 RORBQ92753 470 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 FCRL4Q96PJ5 515 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 MAPKAP1Q9BPZ7 522 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 OSBPL10Q9BXB5 764 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 ACTRT3Q9BYD9 372 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 TBL1XR1Q9BZK7 514 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 MAGIXQ9H6Y5 334 aa10.97□□□□□ -0.65
VPS4A-201ENST00000254950 CD320Q9NPF0 282 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms