RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SEC14L4Q9UDX3 406 aa17.77■□□□□ 0.44
CPSF3-201ENST00000238112 PRKAB1Q9Y478 270 aa17.77■□□□□ 0.44
CPSF3-201ENST00000238112 ANHXE9PGG2 379 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 HMGN4O00479 90 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 SEMA7AO75326 666 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 CXCR2P25025 360 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 ITGB7P26010 798 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 TNFSF8P32971 234 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 TARDBPQ13148 414 aaKnown RBP eCLIP17.77■□□□□ 0.43
CPSF3-201ENST00000238112 DHCR24Q15392 516 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 RBM45Q8IUH3 476 aaKnown RBP17.77■□□□□ 0.43
CPSF3-201ENST00000238112 DCUN1D3Q8IWE4 304 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 OR8J1Q8NGP2 316 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 SMPDL3AQ92484 453 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 EXOSC8Q96B26 276 aaKnown RBP17.77■□□□□ 0.43
CPSF3-201ENST00000238112 ZSWIM3Q96MP5 696 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 QRFPRQ96P65 431 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 SDHCQ99643 169 aaPredicted RBP17.77■□□□□ 0.43
CPSF3-201ENST00000238112 TSSK6Q9BXA6 273 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 ZNF717Q9BY31 904 aaPredicted RBP17.77■□□□□ 0.43
CPSF3-201ENST00000238112 OR52A5Q9H2C5 316 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 RHBGQ9H310 441 aa17.77■□□□□ 0.43
CPSF3-201ENST00000238112 SLC9A3R1O14745 358 aaPredicted RBP17.76■□□□□ 0.43
CPSF3-201ENST00000238112 SLC28A2O43868 658 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 VEGFDO43915 354 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 TBX19O60806 448 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 UGT2B17O75795 530 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 SLITRK5O94991 958 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 BSGP35613 385 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 RPS19P39019 145 aaKnown RBP17.76■□□□□ 0.43
CPSF3-201ENST00000238112 KCNJ5P48544 419 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 ZNF91Q05481 1191 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 C1DQ13901 141 aaKnown RBP17.76■□□□□ 0.43
CPSF3-201ENST00000238112 BCL2A1Q16548 175 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 CCDC92Q53HC0 331 aaPredicted RBP17.76■□□□□ 0.43
CPSF3-201ENST00000238112 PGBD2Q6P3X8 592 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 PDZD3Q86UT5 571 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 CELF2-AS1Q8N7Q2 184 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 TCEANCQ8N8B7 351 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 OR9Q1Q8NGQ5 310 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 WFIKKN2Q8TEU8 576 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 ARRDC3Q96B67 414 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 ZBED6CLQ96FA7 236 aaPredicted RBP17.76■□□□□ 0.43
CPSF3-201ENST00000238112 DHRS1Q96LJ7 313 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 CTRCQ99895 268 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 MS4A8Q9BY19 250 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 A8MU76 341 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 HIDE1A8MVS5 230 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 TBX6O95947 436 aaPredicted RBP17.76■□□□□ 0.43
CPSF3-201ENST00000238112 CISD3P0C7P0 127 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 CSF2RAP15509 400 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 ENDOUP21128 410 aaKnown RBP17.76■□□□□ 0.43
CPSF3-201ENST00000238112 RORCP51449 518 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 NTHL1P78549 312 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 MFSD4BQ5TF39 518 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 PLPP4Q5VZY2 271 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 TMC5Q6UXY8 1006 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 SZRD1Q7Z422 152 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 ANKRD53Q8N9V6 530 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 POLR2J2Q9GZM3 115 aaKnown RBP17.76■□□□□ 0.43
CPSF3-201ENST00000238112 PELI2Q9HAT8 420 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 STUB1Q9UNE7 303 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 TRAPPC4Q9Y296 219 aa17.76■□□□□ 0.43
CPSF3-201ENST00000238112 MYL12BO14950 172 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 ADH5P11766 374 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 TNNI3P19429 210 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 GSTM5P46439 218 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 PCBP4P57723 403 aaKnown RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 RUNX1T1Q06455 604 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 DPTQ07507 201 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 SPATC1Q76KD6 591 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 CACTIN-AS1Q8N1I8 211 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 CHAC2Q8WUX2 184 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 TFGQ92734 400 aaPredicted RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 TMCO6Q96DC7 493 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 RSPO3Q9BXY4 272 aaPredicted RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 HOXD1Q9GZZ0 328 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 MOV10Q9HCE1 1003 aaKnown RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 SIRT3Q9NTG7 399 aaPredicted RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 CUEDC1Q9NWM3 386 aaPredicted RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 FBXL12Q9NXK8 326 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 TMEM98Q9Y2Y6 226 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 SNX11Q9Y5W9 270 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 LTBP2Q14767 1821 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 CACNB4O00305 520 aaPredicted RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 B4GALT2O60909 372 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 NME6O75414 186 aaPredicted RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 CCT3P49368 545 aaKnown RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 ERVFC1P60507 584 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 FNDC3BQ53EP0 1204 aaKnown RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 C11orf96Q7Z7L8 435 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 NUDT13Q86X67 352 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 ZNF513Q8N8E2 541 aaPredicted RBP17.75■□□□□ 0.43
CPSF3-201ENST00000238112 IL17RDQ8NFM7 739 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 OR4D11Q8NGI4 311 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 OR8D1Q8WZ84 308 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 SNTG1Q9NSN8 517 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 TVP23BQ9NYZ1 205 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 P2RX2Q9UBL9 471 aa17.75■□□□□ 0.43
CPSF3-201ENST00000238112 FEZF1A0PJY2 475 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms