RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 GJB2P29033 226 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NDUFA6P56556 154 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ST3GAL4Q11206 333 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CDK10Q15131 360 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CDO1Q16878 200 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RNASEKQ6P5S7 137 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CASP12Q6UXS9 341 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CHST15Q7LFX5 561 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NAA40Q86UY6 237 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 LGI2Q8N0V4 545 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR6M1Q8NGM8 313 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SMIM12Q96EX1 92 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 LMLNQ96KR4 655 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NECTIN4Q96NY8 510 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SLC6A7Q99884 636 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MACROD1Q9BQ69 325 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SRRQ9GZT4 340 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 THAP2Q9H0W7 228 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SLC6A5Q9Y345 797 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 STK36Q9NRP7 1315 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CCDC195A0A1B0GUA6 201 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM233B4DJY2 109 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TMX2-CTNND1H3BSU7 103 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 C5AR1P21730 350 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TXKP42681 527 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RPL14P50914 215 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RAB28P51157 221 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CLCNKBP51801 687 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF41P51814 821 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PJVKQ0ZLH3 352 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CERKLQ49MI3 558 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MRNIPQ6NTE8 343 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 C12orf40Q86WS4 652 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CDC20BQ86Y33 519 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR6Y1Q8NGX8 325 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SPATA22Q8NHS9 363 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RHBDF1Q96CC6 855 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PGAM5Q96HS1 289 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PARK7Q99497 189 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OCSTAMPQ9BR26 566 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GPR87Q9BY21 358 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PGAP2Q9UHJ9 254 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TGIF2-C20orf24A0A0A6YYL0 155 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 XRCC2O43543 280 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NXPH2O95156 264 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 IFNA17P01571 189 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 C2P06681 752 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 H2AFB2P0C5Z0 115 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ADSSP30520 456 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CHRNA4P43681 627 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 IDH3GP51553 393 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CCR8P51685 355 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 HERV-K104P63124 156 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GRM4Q14833 912 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 UGT8Q16880 541 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RWDD4Q6NW29 188 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ADIPOR2Q86V24 386 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR2T34Q8NGX1 318 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ITFG1Q8TB96 612 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RASD2Q96D21 266 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TTLL2Q9BWV7 592 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RAB18Q9NP72 206 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 UTS2RQ9UKP6 389 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ACTL7BQ9Y614 415 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 E7ENX8 843 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MAGEB4O15481 346 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 KDELR3O43731 214 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CEACAM1P13688 526 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 B4GALT1P15291 398 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SMPD1P17405 629 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 HOXB8P17481 243 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CSNK1EP49674 416 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SNRPEP62304 92 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NAAAQ02083 359 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PTSQ03393 145 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ASAH1Q13510 395 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PTCHD3Q3KNS1 767 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM177Q53S58 311 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FAM46DQ8NEK8 389 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RERGQ96A58 199 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SLC41A2Q96JW4 573 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SIRT3Q9NTG7 399 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RNF146Q9NTX7 359 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SLC38A7Q9NVC3 462 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NCKIPSDQ9NZQ3 722 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ZFR2Q9UPR6 939 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ASTN1O14525 1302 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SNAI2O43623 268 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TBX19O60806 448 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PGCP20142 388 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 POU3F2P20265 443 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 USF1P22415 310 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MAGEA5P43359 124 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 EMP1P54849 157 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PKIAP61925 76 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CDC20Q12834 499 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MRM1Q6IN84 353 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TSSK4Q6SA08 328 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF517Q6ZMY9 492 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TMPPEQ6ZT21 453 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms