RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 LMNAP02545 664 aaKnown RBP17.37■□□□□ 0.37
CLN3-254ENST00000637050 GP1BAP07359 652 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 CD59P13987 128 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 UQCRC2P22695 453 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 FAM214AQ32MH5 1076 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 LCN8Q6JVE9 175 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 TLDC1Q6P9B6 456 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 SERPINA11Q86U17 422 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 SHISA5Q8N114 240 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 CLEC4FQ8N1N0 589 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 ZFP28Q8NHY6 868 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 SUN3Q8TAQ9 357 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 ZNF501Q96CX3 271 aaPredicted RBP17.37■□□□□ 0.37
CLN3-254ENST00000637050 CCDC74BQ96LY2 380 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 GFM1Q96RP9 751 aaKnown RBP17.37■□□□□ 0.37
CLN3-254ENST00000637050 RASSF4Q9H2L5 321 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 SYNDIG1Q9H7V2 258 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 DCLRE1BQ9H816 532 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 FGF21Q9NSA1 209 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 SIRT3Q9NTG7 399 aaPredicted RBP17.37■□□□□ 0.37
CLN3-254ENST00000637050 GIMAP4Q9NUV9 329 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 ENTPD4Q9Y227 616 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 SNX13Q9Y5W8 968 aa17.37■□□□□ 0.37
CLN3-254ENST00000637050 ARPC2O15144 300 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 CHST10O43529 356 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 FKBP6O75344 327 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 STAMBPO95630 424 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 CSNK2A2P19784 350 aaPredicted RBP17.36■□□□□ 0.37
CLN3-254ENST00000637050 MVDP53602 400 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 ITGA1P56199 1179 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 SIM1P81133 766 aaPredicted RBP17.36■□□□□ 0.37
CLN3-254ENST00000637050 SHC2P98077 582 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 DUSP2Q05923 314 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 HSPB3Q12988 150 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 SPIDRQ14159 915 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 ZNF750Q32MQ0 723 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 AAGABQ6PD74 315 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 SLITRK4Q8IW52 837 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 SAMD14Q8IZD0 417 aaPredicted RBP17.36■□□□□ 0.37
CLN3-254ENST00000637050 PRSS33Q8NF86 280 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 TNIP2Q8NFZ5 429 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 SLC26A7Q8TE54 656 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 PRRX2Q99811 253 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 EPS8L2Q9H6S3 715 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 RNPEPL1Q9HAU8 725 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 CUTCQ9NTM9 273 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 FTSJ1Q9UET6 329 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 SERTAD3Q9UJW9 196 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 ZNF780BQ9Y6R6 833 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 D6RAR5 112 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 ATP6V1B2P21281 511 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 CDK9P50750 372 aaKnown RBP17.36■□□□□ 0.37
CLN3-254ENST00000637050 NCBP2P52298 156 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLN3-254ENST00000637050 RGNQ15493 299 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 PROSER1Q86XN7 944 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 GPR135Q8IZ08 494 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 ENDOVQ8N8Q3 282 aaKnown RBP17.36■□□□□ 0.37
CLN3-254ENST00000637050 TMEM52Q8NDY8 209 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 OR4K14Q8NGD5 310 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 PNPT1Q8TCS8 783 aaKnown RBP17.36■□□□□ 0.37
CLN3-254ENST00000637050 REXO5Q96IC2 774 aaKnown RBP17.36■□□□□ 0.37
CLN3-254ENST00000637050 CHST8Q9H2A9 424 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 FANCEQ9HB96 536 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 GPATCH2Q9NW75 528 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 MAGEL2Q9UJ55 1249 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 HCN4Q9Y3Q4 1203 aa17.36■□□□□ 0.37
CLN3-254ENST00000637050 A0A1W2PS29 197 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 ELOVL7A1L3X0 281 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 FAM227AF5H4B4 570 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 H0YIG0 161 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 NTRK1P04629 796 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 C8BP07358 591 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 C8orf89P0DMQ9 161 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 RNH1P13489 461 aaKnown RBP17.35■□□□□ 0.37
CLN3-254ENST00000637050 GGT1P19440 569 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 MPIP34949 423 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 SOAT1P35610 550 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 FEN1P39748 380 aaKnown RBP17.35■□□□□ 0.37
CLN3-254ENST00000637050 AVPR1BP47901 424 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 ACY1Q03154 408 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 SPEM2Q0P670 501 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 AASDHQ4L235 1098 aaPredicted RBP17.35■□□□□ 0.37
CLN3-254ENST00000637050 YOD1Q5VVQ6 348 aaPredicted RBP17.35■□□□□ 0.37
CLN3-254ENST00000637050 CYP2R1Q6VVX0 501 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 MICU2Q8IYU8 434 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 CCDC116Q8IYX3 515 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 RCBTB1Q8NDN9 531 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 OR52N2Q8NGI0 321 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 OR5AK3PQ8NH89 298 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 ADAMTS18Q8TE60 1221 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 TANKQ92844 425 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 MVB12AQ96EY5 273 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 DPH2Q9BQC3 489 aaPredicted RBP17.35■□□□□ 0.37
CLN3-254ENST00000637050 LRFN3Q9BTN0 628 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 EDEM2Q9BV94 578 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 TRIM15Q9C019 465 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 S100A14Q9HCY8 104 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 RXFP3Q9NSD7 469 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 ACSL6Q9UKU0 697 aa17.35■□□□□ 0.37
CLN3-254ENST00000637050 SNX8Q9Y5X2 465 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms