RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 AKT1P31749 480 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 HSPA7P48741 367 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 VEGFCP49767 419 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 FOXK2Q01167 660 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SIGLEC14Q08ET2 396 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SQSTM1Q13501 440 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 P2RY14Q15391 338 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 TAF1AQ15573 450 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 SSX2Q16385 188 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 DGKKQ5KSL6 1271 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 CELF3Q5SZQ8 465 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 HECTD3Q5T447 861 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ZNF549Q6P9A3 640 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 WASH2PQ6VEQ5 465 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 USP53Q70EK8 1073 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 RHOUQ7L0Q8 258 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 DDX53Q86TM3 631 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 C7orf31Q8N865 590 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 WDSUB1Q8N9V3 476 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 MCPH1Q8NEM0 835 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 OR52E4Q8NGH9 312 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ZDHHC1Q8WTX9 485 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 RAB7BQ96AH8 199 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 NSUN5Q96P11 429 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 ZYG11BQ9C0D3 744 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SEMA4BQ9NPR2 832 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 FAM212BQ9NTI7 297 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 THUMPD1Q9NXG2 353 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 ZMYM5Q9UJ78 669 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 RPS6KA6Q9UK32 745 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SAMD4AQ9UPU9 718 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 GPR52Q9Y2T5 361 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 RNF215Q9Y6U7 377 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 CASP8AP2Q9UKL3 1982 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 TEX13CA0A0J9YWL9 993 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 A0A1B0GWJ7 208 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 LRRC14BA6NHZ5 514 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ARNTLO00327 626 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 DHX15O43143 795 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 LILRB5O75023 590 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SDC3O75056 442 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 CLN5O75503 358 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 OR4F21O95013 312 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 H2AFB1P0C5Y9 115 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 H2AFB2P0C5Z0 115 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 NR2C1P13056 603 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ADH7P40394 386 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ASPAP45381 313 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 GNG10P50151 68 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 AGFG1P52594 562 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 ITGA1P56199 1179 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 DSC2Q02487 901 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ZNF667Q5HYK9 610 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 FKBP1CQ5VVH2 108 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 OR4F3Q6IEY1 312 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 NOTUMQ6P988 496 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 CAMKVQ8NCB2 501 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 GTF3AQ92664 365 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 MRPS24Q96EL2 167 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 ADAD1Q96M93 576 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 PDCD2LQ9BRP1 358 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 PRR14Q9BWN1 585 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ZCCHC2Q9C0B9 1178 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 CRISPLD2Q9H0B8 497 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 POLR3FQ9H1D9 316 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 HHATLQ9HCP6 504 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 B3GAT2Q9NPZ5 323 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 DLL4Q9NR61 685 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 EPHA6Q9UF33 1036 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 GPR34Q9UPC5 381 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 CBY1Q9Y3M2 126 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 A0A1B0GV90 55 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 HYKKA2RU49 373 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 POM121BA6NF01 834 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ACKR2O00590 384 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 IGHV2-70P01814 119 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 FABP3P05413 133 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SYPP08247 313 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 HIST1H2AGP0C0S8 130 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 HIST1H2ADP20671 130 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 FPR3P25089 353 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 PTPN3P26045 913 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 RNF4P78317 190 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 TNFRSF17Q02223 184 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 NRG1Q02297 640 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 CHAF1BQ13112 559 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 SNTB1Q13884 538 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 GPR176Q14439 515 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 GRIN2CQ14957 1233 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 AVPI1Q5T686 147 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 HIST2H2AA3Q6FI13 130 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ETFRF1Q6IPR1 90 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 ESRP1Q6NXG1 681 aaKnown RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 FUT10Q6P4F1 479 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 METAP1DQ6UB28 335 aaPredicted RBP7.57□□□□□ -1.2
VPS11-209ENST00000622309 GALNTL5Q7Z4T8 443 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 PYROXD2Q8N2H3 581 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 C12orf29Q8N999 325 aa7.57□□□□□ -1.2
VPS11-209ENST00000622309 UXS1Q8NBZ7 420 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms