RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 SHPKQ9UHJ6 478 aa4.84□□□□□ -1.63
VPS13D-214ENST00000620676 OSGIN1Q9UJX0 560 aa4.84□□□□□ -1.63
VPS13D-214ENST00000620676 GLI2P10070 1586 aa4.84□□□□□ -1.63
VPS13D-214ENST00000620676 MYH10P35580 1976 aa4.84□□□□□ -1.63
VPS13D-214ENST00000620676 ERVH48-1M5A8F1 160 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 HAS3O00219 553 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 RBMXL2O75526 392 aaKnown RBP4.84□□□□□ -1.64
VPS13D-214ENST00000620676 MAS1P04201 325 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 RPN2P04844 631 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CNR2P34972 360 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CRISP3P54108 245 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 SPHARQ15513 63 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 FBXO42Q6P3S6 717 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CEP68Q76N32 757 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 FAM129CQ86XR2 697 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 TMEM125Q96AQ2 219 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 MEGF10Q96KG7 1140 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 BTBD1Q9H0C5 482 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 ZDHHC6Q9H6R6 413 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CAMSAP1Q5T5Y3 1602 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 ABCA8O94911 1581 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 MTX2O75431 263 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 EEDO75530 441 aaKnown RBP4.84□□□□□ -1.64
VPS13D-214ENST00000620676 NTSR2O95665 410 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 QDPRP09417 244 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 DHRS4L1P0CG22 281 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 RBM34P42696 430 aaKnown RBP4.84□□□□□ -1.64
VPS13D-214ENST00000620676 TTLL9Q3SXZ7 439 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CSF3RQ99062 836 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 ALOXE3Q9BYJ1 711 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 KLHL28Q9NXS3 571 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 FBXW2Q9UKT8 454 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 WASF3Q9UPY6 502 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 MYH6P13533 1939 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CKMP06732 381 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 ITGB5P18084 799 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 GGT1P19440 569 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CD34P28906 385 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 PITPNBP48739 271 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CLCN4P51793 760 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 MAP2K6P52564 334 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 RIPPLY1Q0D2K3 151 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 ABHD18Q0P651 414 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 RAB11FIP2Q7L804 512 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 SMAP2Q8WU79 429 aaPredicted RBP4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CCDC74AQ96AQ1 378 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CKLFQ9UBR5 152 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 BHMG1C9JSJ3 638 aaPredicted RBP4.84□□□□□ -1.64
VPS13D-214ENST00000620676 B4GALT3O60512 393 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 RPP40O75818 363 aaKnown RBP4.84□□□□□ -1.64
VPS13D-214ENST00000620676 APOC1P02654 83 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 FBXO45P0C2W1 286 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 RAD52P43351 418 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 GPR17Q13304 367 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CDNFQ49AH0 187 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 ZNF678Q5SXM1 525 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 PRAMEF13Q5VWM6 474 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 KCT2Q8NC54 265 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 OR4E2Q8NGC2 313 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 GIMAP1Q8WWP7 306 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 CMSS1Q9BQ75 279 aaKnown RBP4.84□□□□□ -1.64
VPS13D-214ENST00000620676 LHX5Q9H2C1 402 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 GHITMQ9H3K2 345 aa4.84□□□□□ -1.64
VPS13D-214ENST00000620676 ELOA3DA6NLF2 546 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-214ENST00000620676 OR2AG2A6NM03 316 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 SCAF4O95104 1147 aaKnown RBP4.83□□□□□ -1.64
VPS13D-214ENST00000620676 ZNF20P17024 532 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 TGM1P22735 817 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 ASPAP45381 313 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 ELOA3BQ3SY89 546 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 SVBPQ8N300 66 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 NXPE1Q8N323 547 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 ELOA3Q8NG57 546 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 DCUN1D4Q92564 292 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 KCNJ9Q92806 393 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 SEC22AQ96IW7 307 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 C10orf90Q96M02 699 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 VPS25Q9BRG1 176 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 CNTN3Q9P232 1028 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 ARRB2P32121 409 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 PPM1AP35813 382 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 XRRA1Q6P2D8 792 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 DRICH1Q6PGQ1 229 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-214ENST00000620676 UBAC2Q8NBM4 344 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 OR4D6Q8NGJ1 314 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 OR52P1PQ8NH57 321 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 WNT2BQ93097 391 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 BRD9Q9H8M2 597 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 NOX3Q9HBY0 568 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 PCDHGC4Q9Y5F7 938 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 HCN1O60741 890 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 RGS11O94810 467 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 TSPAN15O95858 294 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 IGFBP1P08833 259 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-214ENST00000620676 HAPLN1P10915 354 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-214ENST00000620676 LPOP22079 712 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-214ENST00000620676 LARS2Q15031 903 aaKnown RBP4.83□□□□□ -1.64
VPS13D-214ENST00000620676 SLX4IPQ5VYV7 408 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 SLC16A9Q7RTY1 509 aa4.83□□□□□ -1.64
VPS13D-214ENST00000620676 RSC1A1Q92681 617 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 223.3 ms