RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 GNAO1P09471 354 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ATF4P18848 351 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 SLC6A9P48067 706 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 APLP1P51693 650 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CLCN2P51788 898 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 TAS2R43P59537 309 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 FLYWCH1Q4VC44 716 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 PRRT3Q5FWE3 981 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CATSPEREQ5SY80 951 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ABHD11Q8NFV4 315 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 DOK4Q8TEW6 326 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 TREX1Q9NSU2 369 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 HCN3Q9P1Z3 774 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 LIPT1Q9Y234 373 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CACNA1CQ13936 2221 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 A0A1W2PPK0 400 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 E7EQ34 232 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ANHXE9PGG2 379 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 RETP07949 1114 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 FHP07954 510 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 RPS17P08708 135 aaKnown RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 KCNC1P48547 511 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 RNF144AP50876 292 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 NNATQ16517 81 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 GTF2IRD2BQ6EKJ0 949 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 NXPE4Q6UWF7 544 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 GTF2IRD2Q86UP8 949 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ZFP41Q8N8Y5 198 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 OR7G3Q8NG95 312 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 C15orf40Q8WUR7 153 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CCDC115Q96NT0 180 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ERVK13-1Q9NX77 482 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CCDC88AQ3V6T2 1871 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 FEZF1A0PJY2 475 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF726A6NNF4 738 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 SCAMP2O15127 329 aaKnown RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 SMAD6O43541 496 aaKnown RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CDC123O75794 336 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 PRH1P02810 166 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 LCKP06239 509 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 GRIA2P42262 883 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 LRP8Q14114 963 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 NRROSQ86YC3 692 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 SLC15A4Q8N697 577 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 TEX26Q8N6G2 289 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF548Q8NEK5 533 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 OR13J1Q8NGT2 312 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF431Q8TF32 576 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 TMEM19Q96HH6 336 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 TRPV4Q9HBA0 871 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CHMP1AQ9HD42 196 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 WDR37Q9Y2I8 494 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 SPEF1Q9Y4P9 236 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 PCDHGB6Q9Y5F9 930 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 LOC100509620A0A075B734 347 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 OR2AT4A6NND4 320 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 RPS3P23396 243 aaKnown RBP eCLIP13.41□□□□□ -0.265e-7■□□□□ 10.5
CPSF1-212ENST00000616140 EIF1AXP47813 144 aaKnown RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CD97P48960 835 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 GABARAPL2P60520 117 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 CHAF1BQ13112 559 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 NFE2L1Q14494 772 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 ULK3Q6PHR2 472 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 MRPL10Q7Z7H8 261 aaKnown RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 DTX3Q8N9I9 347 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 PSD4Q8NDX1 1056 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 OR4K5Q8NGD3 323 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 FANK1Q8TC84 345 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 NSMAFQ92636 917 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 S100A16Q96FQ6 103 aaKnown RBP13.41□□□□□ -0.26
CPSF1-212ENST00000616140 HSPA12BQ96MM6 686 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 SMIM14Q96QK8 99 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 RNF38Q9H0F5 515 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 SERINC1Q9NRX5 453 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 GPRC5BQ9NZH0 403 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 C5AR2Q9P296 337 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 IFT52Q9Y366 437 aa13.41□□□□□ -0.26
CPSF1-212ENST00000616140 L7N2F9 121 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 SMAD9O15198 467 aaKnown RBP13.4□□□□□ -0.26
CPSF1-212ENST00000616140 AHSA1O95433 338 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 CYB5AP00167 134 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 HTR1AP08908 422 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 HOXD8P13378 290 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-212ENST00000616140 CNR2P34972 360 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 POU6F2P78424 691 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-212ENST00000616140 MARCH8Q5T0T0 291 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 MLIPQ5VWP3 458 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 SLC29A4Q7RTT9 530 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 NAGSQ8N159 534 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 Q8N402 240 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 OR5M3Q8NGP4 307 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 TMEM174Q8WUU8 243 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 JPH3Q8WXH2 748 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-212ENST00000616140 PMM1Q92871 262 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 SPATA9Q9BWV2 254 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 MTG2Q9H4K7 406 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 ARNT2Q9HBZ2 717 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 ALKBH4Q9NXW9 302 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 MAGED1Q9Y5V3 778 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-212ENST00000616140 HSPE1-MOB4S4R3N1 261 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms