RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PAGE2Q7Z2X7 111 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 NUDCD3Q8IVD9 361 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 ARMC10Q8N2F6 343 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 AGAP4Q96P64 663 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 SORT1Q99523 831 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 ADAP2Q9NPF8 381 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 PTGFRNQ9P2B2 879 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 HEY2Q9UBP5 337 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 PCDHA9Q9Y5H5 950 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 GCN1Q92616 2671 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 WDR91A4D1P6 747 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 TMEM200CA6NKL6 621 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 PRKNO60260 465 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 RSL1D1O76021 490 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 MYO1DO94832 1006 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 DDAH2O95865 285 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 STT3AP46977 705 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 ACTN3Q08043 901 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 KLRB1Q12918 225 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 SERTAD2Q14140 314 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 ELAVL1Q15717 326 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 CHI3L2Q15782 390 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 XKR7Q5GH72 579 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 HPS6Q86YV9 775 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 ZNF321PQ8N8H1 164 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 B3GNT7Q8NFL0 401 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 LMF1Q96S06 567 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 VIPAS39Q9H9C1 493 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 PRM3Q9NNZ6 103 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 KCNK9Q9NPC2 374 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 PNO1Q9NRX1 252 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 NMRK1Q9NWW6 199 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 HAO1Q9UJM8 370 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 EXO1Q9UQ84 846 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 TRAF6Q9Y4K3 522 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 SPACA6W5XKT8 324 aa18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 UBR5O95071 2799 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-221ENST00000599833 FASNP49327 2511 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 ARHGAP10A1A4S6 786 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 HRKO00198 91 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 PCDH7O60245 1069 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 GPR75O95800 540 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 SERPINE1P05121 402 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 JUNP05412 331 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 BGNP21810 368 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 TIA1P31483 386 aaKnown RBP eCLIP18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 BUD31P41223 144 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 MAPK12P53778 367 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 TRA2BP62995 288 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 DUSP2Q05923 314 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 SPIN4Q56A73 249 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 CROCCQ5TZA2 2017 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 SLC6A19Q695T7 634 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 FCRLBQ6BAA4 426 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 SLC48A1Q6P1K1 146 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 ISLR2Q6UXK2 745 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 Q6ZS92 163 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 CRLF3Q8IUI8 442 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 CLYBLQ8N0X4 340 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 STMN4Q9H169 189 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 SHANK1Q9Y566 2161 aa18.19■□□□□ 0.5
SHKBP1-221ENST00000599833 NBASA2RRP1 2371 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 SYNDIG1LA6NDD5 238 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 LSM1O15116 133 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 CLPSP04118 112 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 IGKV3-11P04433 115 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 ALPPP05187 535 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 STX4Q12846 297 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 PRSS53Q2L4Q9 553 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 ZNF750Q32MQ0 723 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 SH2D4BQ5SQS7 431 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 OR52E8Q6IFG1 317 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 LINC00696Q6ZRV3 163 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 ANKRD42Q8N9B4 389 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 ZNF721Q8TF20 911 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 C16orf78Q8WTQ4 265 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 TWIST2Q8WVJ9 160 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 NCLNQ969V3 563 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 PPWD1Q96BP3 646 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 C3orf30Q96M34 536 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 ZNF681Q96N22 645 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 ZNF446Q9NWS9 450 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 ANAPC2Q9UJX6 822 aa18.18■□□□□ 0.5
SHKBP1-221ENST00000599833 TMEM114B3SHH9 223 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 PIP5K1BO14986 540 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 KLHL41O60662 606 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 DPM1O60762 260 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 IL3P08700 152 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 ABCE1P61221 599 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 AP2B1P63010 937 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 BTKQ06187 659 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 ACSM2AQ08AH3 577 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 PLEKHN1Q494U1 663 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 ACSM2BQ68CK6 577 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 HDXQ7Z353 690 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 ST13P4Q8IZP2 240 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 ZNF781Q8N8C0 355 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 MORN4Q8NDC4 146 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 OR14A16Q8NHC5 309 aa18.17■□□□□ 0.5
SHKBP1-221ENST00000599833 ATP6V1G3Q96LB4 118 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms