RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 CHTF18Q8WVB6 975 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 WDR60Q8WVS4 1066 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 THAP4Q8WY91 577 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 RSC1A1Q92681 617 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 ASB9Q96DX5 294 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 ZDHHC12Q96GR4 267 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 RSRC1Q96IZ7 334 aaKnown RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 FCRL1Q96LA6 429 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 TEX37Q96LM6 180 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 MENTQ9BUN1 341 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 MUC13Q9H3R2 512 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 PDE7BQ9NP56 450 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 ATAD3AQ9NVI7 634 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 SIRT5Q9NXA8 310 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 TMEM181Q9P2C4 612 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 ZNF624Q9P2J8 865 aaPredicted RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 RARRES3Q9UL19 164 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 FARSAQ9Y285 508 aaKnown RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 DLGAP4Q9Y2H0 992 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 WBP11Q9Y2W2 641 aaKnown RBP9.63□□□□□ -0.87
SS18-210ENST00000578700 ZNF451Q9Y4E5 1061 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 PCDHGA6Q9Y5G7 932 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 TACC2O95359 2948 aa9.63□□□□□ -0.87
SS18-210ENST00000578700 A0A1W2PPV9 198 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 C21orf140B9A014 251 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 AKAP10O43572 662 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 SH3BGRLO75368 114 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 ERN1O75460 977 aaKnown RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 LRATO95237 230 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 TGFB1P01137 390 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 SERPIND1P05546 499 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 CHRM5P08912 532 aaPredicted RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 FOLR1P15328 257 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 CD1EP15812 388 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 TCN1P20061 433 aaPredicted RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 IL12AP29459 219 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 GSTM5P46439 218 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 ARL4DP49703 201 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 DGKQP52824 942 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 EEFSECP57772 596 aaKnown RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 CSNK1G2P78368 415 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 ZNF763Q0D2J5 394 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 RAPSNQ13702 412 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 CEACAM7Q14002 265 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 CAPRIN1Q14444 709 aaKnown RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 TLR1Q15399 786 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 UGT8Q16880 541 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.62□□□□□ -0.87
SS18-210ENST00000578700 TMEM35AQ53FP2 167 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 SPANXN4Q5MJ08 99 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 CPTPQ5TA50 214 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 KHDRBS2Q5VWX1 349 aaKnown RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 JMJD6Q6NYC1 403 aaPredicted RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 ZFP1Q6P2D0 407 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 GALNT18Q6P9A2 607 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 SLC2A7Q6PXP3 512 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 IKBIPQ70UQ0 350 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 COMMD6Q7Z4G1 85 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 PACS2Q86VP3 889 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 OOSP2Q86WS3 158 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 NUDT13Q86X67 352 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 TMEM132CQ8N3T6 1108 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 KRTCAP2Q8N6L1 136 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 RNF148Q8N7C7 305 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 ENDOVQ8N8Q3 282 aaKnown RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 LMNTD1Q8N9Z9 388 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 HIPK4Q8NE63 616 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 SRFBP1Q8NEF9 429 aaKnown RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 TRPV3Q8NET8 790 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 OR2L3Q8NG85 312 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 OR4K1Q8NGD4 311 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 OR2A1Q8NGT9 310 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 DNAJB14Q8TBM8 379 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 MR1Q95460 341 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 RGMAQ96B86 450 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 GBP5Q96PP8 586 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 KCTD14Q9BQ13 255 aaPredicted RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 GPATCH1Q9BRR8 931 aaKnown RBP9.62□□□□□ -0.87
SS18-210ENST00000578700 EBPLQ9BY08 206 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 VCX3BQ9H321 246 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 MCM8Q9UJA3 840 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 PCDHGB4Q9UN71 923 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 SH2B3Q9UQQ2 575 aa9.62□□□□□ -0.87
SS18-210ENST00000578700 A0A096LPI6 279 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 GSAPA4D1B5 854 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 C2orf74A8MZ97 194 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 TOX3O15405 576 aaPredicted RBP9.61□□□□□ -0.87
SS18-210ENST00000578700 DPM1O60762 260 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 GUCY1B2O75343 617 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 CLEC3AO75596 197 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 BCAS2O75934 225 aaPredicted RBP9.61□□□□□ -0.87
SS18-210ENST00000578700 SORBS2O94875 1100 aaKnown RBP9.61□□□□□ -0.87
SS18-210ENST00000578700 RECKO95980 971 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 HSD17B1P14061 328 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 NELFEP18615 380 aaKnown RBP9.61□□□□□ -0.87
SS18-210ENST00000578700 SLC6A2P23975 617 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 PSMB5P28074 263 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 AHRP35869 848 aa9.61□□□□□ -0.87
SS18-210ENST00000578700 TRPC1P48995 793 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms