RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CD59P13987 128 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 CALB2P22676 271 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 JAK1P23458 1154 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 PAX7P23759 505 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 PTPN6P29350 595 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 CTSCP53634 463 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 UCNP55089 124 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 HNRNPH2P55795 449 aaKnown RBP5.35□□□□□ -1.55
VPS53-219ENST00000576019 ROR2Q01974 943 aaKnown RBP5.35□□□□□ -1.55
VPS53-219ENST00000576019 CRYZQ08257 329 aaKnown RBP5.35□□□□□ -1.55
VPS53-219ENST00000576019 PPP1R7Q15435 360 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 PDK4Q16654 411 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 SMTNL2Q2TAL5 461 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 XKR9Q5GH70 373 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 GRTP1Q5TC63 336 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 ASPHD1Q5U4P2 390 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 ZNF770Q6IQ21 691 aaPredicted RBP5.35□□□□□ -1.55
VPS53-219ENST00000576019 PARM1Q6UWI2 310 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 LUZP1Q86V48 1076 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 PALB2Q86YC2 1186 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 FAM71CQ8NEG0 241 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 STEAP2Q8NFT2 490 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 OR6C4Q8NGE1 309 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 ZNF671Q8TAW3 534 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 SAP25Q8TEE9 199 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 PPP4R1Q8TF05 950 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 WASF1Q92558 559 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 HAS2Q92819 552 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 SEMA4DQ92854 862 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 DAZLQ92904 295 aaKnown RBP5.35□□□□□ -1.55
VPS53-219ENST00000576019 NXPE2Q96DL1 559 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 THOC3Q96J01 351 aaKnown RBP5.35□□□□□ -1.55
VPS53-219ENST00000576019 ZNF583Q96ND8 569 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 ZNF607Q96SK3 696 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 PCDHB18PQ96TA0 734 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 CCT7Q99832 543 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 CCDC77Q9BR77 488 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 SH2D3AQ9BRG2 576 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 NTMT1Q9BV86 223 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 GON7Q9BXV9 100 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 CAPS2Q9BXY5 557 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 VCX2Q9H322 139 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 DPEP3Q9H4B8 488 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 DCLRE1BQ9H816 532 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 CRLF2Q9HC73 371 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 GLRX2Q9NS18 164 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 THSD1Q9NS62 852 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 C2orf42Q9NWW7 574 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 FOXJ2Q9P0K8 574 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 B3GAT1Q9P2W7 334 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 TNNQ9UQP3 1299 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 RYR3Q15413 4870 aa5.35□□□□□ -1.55
VPS53-219ENST00000576019 RP1L1Q8IWN7 2480 aaPredicted RBP5.34□□□□□ -1.55
VPS53-219ENST00000576019 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 TRAV24A0A0B4J272 114 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 A0A1W2PP11 408 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 VPS37CA5D8V6 355 aaPredicted RBP5.34□□□□□ -1.55
VPS53-219ENST00000576019 LRRC3CA6NJW4 275 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 TARM1B6A8C7 271 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 TMEM178BH3BS89 294 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 UGT2B4P06133 528 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 HKR1P10072 659 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 B4GALT1P15291 398 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 CHRNB2P17787 502 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 CLDN15P56746 228 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 BLOC1S1P78537 153 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 RASGEF1BQ0VAM2 473 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 PLD1Q13393 1074 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 PDIA5Q14554 519 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 CTF1Q16619 201 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 CCDC57Q2TAC2 916 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 PAPPA-AS1Q5QFB9 102 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 RHOUQ7L0Q8 258 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 COMMD2Q86X83 199 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 SLC22A9Q8IVM8 553 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 BCORP1Q8N888 145 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 GBP7Q8N8V2 638 aaPredicted RBP5.34□□□□□ -1.55
VPS53-219ENST00000576019 OR52I2Q8NH67 350 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 AKR7LQ8NHP1 331 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 FBXO32Q969P5 355 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 GIMAP5Q96F15 307 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 FAM71F1Q96KD3 344 aaPredicted RBP5.34□□□□□ -1.55
VPS53-219ENST00000576019 WDR77Q9BQA1 342 aaPredicted RBP5.34□□□□□ -1.55
VPS53-219ENST00000576019 BTBD10Q9BSF8 475 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 TBC1D10AQ9BXI6 508 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 NACAP1Q9BZK3 213 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 WWTR1Q9GZV5 400 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 Q9H8V8 135 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 GOLGA2P5Q9HBQ8 144 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 TRPV5Q9NQA5 729 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 GSN-AS1Q9NRJ2 163 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 HEBP1Q9NRV9 189 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 GTSE1Q9NYZ3 720 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 KLHL9Q9P2J3 617 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 ATXN10Q9UBB4 475 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 CLEC4AQ9UMR7 237 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 MRPS7Q9Y2R9 242 aaKnown RBP5.34□□□□□ -1.55
VPS53-219ENST00000576019 FOCADQ5VW36 1801 aa5.34□□□□□ -1.55
VPS53-219ENST00000576019 COL4A2P08572 1712 aa5.34□□□□□ -1.56
VPS53-219ENST00000576019 NAV1Q8NEY1 1877 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms