RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PAFAH1B1P43034 410 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 RPL21P46778 160 aaKnown RBP19.45■□□□□ 0.7
VPS53-216ENST00000574029 STT3AP46977 705 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 ASPHQ12797 758 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 MYBPHQ13203 477 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 ZKSCAN8Q15776 578 aaPredicted RBP19.45■□□□□ 0.7
VPS53-216ENST00000574029 AP5B1Q2VPB7 878 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 ADGRD1Q6QNK2 874 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 CAPN12Q6ZSI9 719 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 LIX1LQ8IVB5 337 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 MYRIPQ8NFW9 859 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 UBE2E3Q969T4 207 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 SARAFQ96BY9 339 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 SENP5Q96HI0 755 aaPredicted RBP19.45■□□□□ 0.7
VPS53-216ENST00000574029 RBBP8Q99708 897 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 CPNE1Q99829 537 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 LDAHQ9H6V9 325 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 ACAD8Q9UKU7 415 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 RNF112Q9ULX5 631 aa19.45■□□□□ 0.7
VPS53-216ENST00000574029 NADKO95544 446 aaPredicted RBP19.44■□□□□ 0.7
VPS53-216ENST00000574029 TGFB1P01137 390 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 COX7A2P14406 83 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 ENDOUP21128 410 aaKnown RBP19.44■□□□□ 0.7
VPS53-216ENST00000574029 CASQ1P31415 396 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 PIGAP37287 484 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 ADH7P40394 386 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 DLX5P56178 289 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 PCDH1Q08174 1060 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 C1orf185Q5T7R7 199 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 WLSQ5T9L3 541 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 SLC22A10Q63ZE4 541 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 MED27Q6P2C8 311 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 LYPD8Q6UX82 237 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 CHSY3Q70JA7 882 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 OR4N5Q8IXE1 308 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 C9orf40Q8IXQ3 194 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 BBOF1Q8ND07 529 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 PYROXD1Q8WU10 500 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 CDKL2Q92772 493 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 DGAT2Q96PD7 388 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 PHACTR1Q9C0D0 580 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 TXNDC16Q9P2K2 825 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 SNX24Q9Y343 169 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 L3MBTL1Q9Y468 752 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.44■□□□□ 0.7
VPS53-216ENST00000574029 ITPR3Q14573 2671 aa19.44■□□□□ 0.7
VPS53-216ENST00000574029 NCKAP5O14513 1909 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 ARHGAP21Q5T5U3 1957 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 TRGV5A0A0B4J1U4 118 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 ZWINTO95229 277 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 S100BP04271 92 aaPredicted RBP19.43■□□□□ 0.7
VPS53-216ENST00000574029 SERPINB1P30740 379 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 SSR2P43308 183 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 BIKQ13323 160 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 KHDRBS2Q5VWX1 349 aaKnown RBP19.43■□□□□ 0.7
VPS53-216ENST00000574029 DGAT2L6Q6ZPD8 337 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 CYS1Q717R9 158 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 SLC15A4Q8N697 577 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 OR7G3Q8NG95 312 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 SLC22A8Q8TCC7 542 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 PAQR8Q8TEZ7 354 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 NRGNQ92686 78 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 CMTM7Q96FZ5 175 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 CNPPD1Q9BV87 410 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 MS4A12Q9NXJ0 267 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 SPRR3Q9UBC9 169 aa19.43■□□□□ 0.7
VPS53-216ENST00000574029 SAP18O00422 153 aaKnown RBP19.42■□□□□ 0.7
VPS53-216ENST00000574029 SH3BGRLO75368 114 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 C1QAP02745 245 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 PCNAP12004 261 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 GABRA1P14867 456 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 GP5P40197 560 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 RAB10P61026 200 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 TBL3Q12788 808 aaKnown RBP19.42■□□□□ 0.7
VPS53-216ENST00000574029 SLAMF1Q13291 335 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 SLC25A35Q3KQZ1 300 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 RIPPLY2Q5TAB7 128 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 DEPDC1Q5TB30 811 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 OR4C11Q6IEV9 310 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 SYT10Q6XYQ8 523 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 STAG3L4Q8TBR4 150 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 EXT2Q93063 718 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 PPWD1Q96BP3 646 aaKnown RBP19.42■□□□□ 0.7
VPS53-216ENST00000574029 SPACA9Q96E40 222 aaPredicted RBP19.42■□□□□ 0.7
VPS53-216ENST00000574029 RBM18Q96H35 190 aaKnown RBP19.42■□□□□ 0.7
VPS53-216ENST00000574029 FBXL20Q96IG2 436 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 ART5Q96L15 291 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 KRT12Q99456 494 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 SORBS1Q9BX66 1292 aaKnown RBP19.42■□□□□ 0.7
VPS53-216ENST00000574029 RPF2Q9H7B2 306 aaKnown RBP19.42■□□□□ 0.7
VPS53-216ENST00000574029 ZNF703Q9H7S9 590 aaPredicted RBP19.42■□□□□ 0.7
VPS53-216ENST00000574029 PROK2Q9HC23 129 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 NUDT4Q9NZJ9 180 aa19.42■□□□□ 0.7
VPS53-216ENST00000574029 TCRBV9S1A1TA0A576 114 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 FAM159BA6NKW6 160 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 FAM47E-STBD1D6RA91 191 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 HRKO00198 91 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 DYRK3O43781 588 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 RFPL3SP0C7P2 107 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 GMPRP36959 345 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms