RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 RASAL1O95294 804 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 GIMD1P0DJR0 217 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 GNSP15586 552 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 MPIP34949 423 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 CASP9P55211 416 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 VSX2P58304 361 aaPredicted RBP11.98□□□□□ -0.49
USP3-213ENST00000559711 CDK6Q00534 326 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 BNIP3Q12983 259 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 MED21Q13503 144 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 SCARB2Q14108 478 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 NRF1Q16656 503 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.98□□□□□ -0.49
USP3-213ENST00000559711 SLC30A8Q8IWU4 369 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 MAML2Q8IZL2 1156 aaPredicted RBP11.98□□□□□ -0.49
USP3-213ENST00000559711 GAB3Q8WWW8 586 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 ELF4Q99607 663 aaPredicted RBP11.98□□□□□ -0.49
USP3-213ENST00000559711 MAP3K3Q99759 626 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 CCDC3Q9BQI4 270 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 IL1RAPQ9NPH3 570 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 GIMAP4Q9NUV9 329 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 ENTPD4Q9Y227 616 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 AK5Q9Y6K8 562 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 RNF215Q9Y6U7 377 aa11.98□□□□□ -0.49
USP3-213ENST00000559711 NUP214P35658 2090 aaPredicted RBP11.98□□□□□ -0.49
USP3-213ENST00000559711 RHPN2P1A8MT19 583 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 TMEM229AB2RXF0 380 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 PDLIM1O00151 329 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 NUDT21O43809 227 aaKnown RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 GALR3O60755 368 aaPredicted RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 DNAJB6O75190 326 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ZNF682O95780 498 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 CST1P01037 141 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 CPN2P22792 545 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 TLX1P31314 330 aaPredicted RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 DHPSP49366 369 aaPredicted RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 DSTNP60981 165 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 DUSP2Q05923 314 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 MYBPC3Q14896 1274 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 SHBQ15464 509 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 PRTGQ2VWP7 1150 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 SPDYE7PQ495Y7 208 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 CRB2Q5IJ48 1285 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 CEACAM20Q6UY09 585 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 CCDC116Q8IYX3 515 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 SAMD14Q8IZD0 417 aaPredicted RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 MARVELD2Q8N4S9 558 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 HORMAD2Q8N7B1 307 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ARL10Q8N8L6 244 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 SFXN5Q8TD22 340 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 GATA6Q92908 595 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 TBC1D20Q96BZ9 403 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ZNF285Q96NJ3 590 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 CD180Q99467 661 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 OSBPL11Q9BXB4 747 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 NPLQ9BXD5 320 aaPredicted RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 Q9H521 79 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 A4GALTQ9NPC4 353 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 SEMA3GQ9NS98 782 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 TMEM74BQ9NUR3 256 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 LRIT1Q9P2V4 623 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 PILRBQ9UKJ0 227 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 AP4B1Q9Y6B7 739 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ZNF780BQ9Y6R6 833 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 TLCD2A6NGC4 264 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 DLGAP1O14490 977 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 GPC1P35052 558 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 FEN1P39748 380 aaKnown RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 GABRA4P48169 554 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ARRB1P49407 418 aaPredicted RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 PCBP3P57721 371 aaKnown RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 SPIDRQ14159 915 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ZNF750Q32MQ0 723 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 PLK5Q496M5 336 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 CYBRD1Q53TN4 286 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 NHSL2Q5HYW2 709 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 OR52E8Q6IFG1 317 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 BHLHB9Q6PI77 547 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 PRSS41Q7RTY9 318 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 PIWIL3Q7Z3Z3 882 aaKnown RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 GALNT10Q86SR1 603 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ZDHHC21Q8IVQ6 265 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 C1orf210Q8IVY1 113 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ZC3H7AQ8IWR0 971 aaKnown RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 OR10Q1Q8NGQ4 319 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 NFKBIDQ8NI38 313 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 TMBIM1Q969X1 311 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 MOAP1Q96BY2 351 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ZDHHC12Q96GR4 267 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 VPS50Q96JG6 964 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 HSH2DQ96JZ2 352 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 EPB41L1Q9H4G0 881 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 ADPRHL2Q9NX46 363 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 THUMPD1Q9NXG2 353 aaKnown RBP11.97□□□□□ -0.49
USP3-213ENST00000559711 SUSD2Q9UGT4 822 aa11.97□□□□□ -0.49
USP3-213ENST00000559711 SPAG17Q6Q759 2223 aa11.96□□□□□ -0.49
USP3-213ENST00000559711 CACNA1IQ9P0X4 2223 aa11.96□□□□□ -0.49
USP3-213ENST00000559711 HMGN4O00479 90 aa11.96□□□□□ -0.5
USP3-213ENST00000559711 CYR61O00622 381 aa11.96□□□□□ -0.5
USP3-213ENST00000559711 SUV39H1O43463 412 aa11.96□□□□□ -0.5
USP3-213ENST00000559711 KIF1CO43896 1103 aaKnown RBP11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms