RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KLHL10Q6JEL2 608 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 C2orf66Q6UXQ4 117 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 NLRP14Q86W24 1093 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 SETD7Q8WTS6 366 aaKnown RBP2.83□□□□□ -1.96
VPS13C-208ENST00000559119 SNX21Q969T3 373 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 SLCO4A1Q96BD0 722 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 ZNF274Q96GC6 653 aaPredicted RBP2.83□□□□□ -1.96
VPS13C-208ENST00000559119 S100A14Q9HCY8 104 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 PDRG1Q9NUG6 133 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 KIF7Q2M1P5 1343 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 RAD50Q92878 1312 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 NCOA3Q9Y6Q9 1424 aa2.83□□□□□ -1.96
VPS13C-208ENST00000559119 PDXKO00764 312 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 FLRT2O43155 660 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 CALCAP01258 141 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 KRT3P12035 628 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 P4HA1P13674 534 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 CPN1P15169 458 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 RPP38P78345 283 aaKnown RBP2.82□□□□□ -1.96
VPS13C-208ENST00000559119 MECOMQ03112 1051 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 UGCGQ16739 394 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 HYIQ5T013 277 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 MZT2BQ6NZ67 158 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 Q6P435 159 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 CLEC4GQ6UXB4 293 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 PRPF39Q86UA1 669 aaKnown RBP2.82□□□□□ -1.96
VPS13C-208ENST00000559119 ARL14Q8N4G2 192 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 ANKRD7Q92527 254 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 EXOC4Q96A65 974 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 VIPAS39Q9H9C1 493 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 ISG20L2Q9H9L3 353 aaKnown RBP2.82□□□□□ -1.96
VPS13C-208ENST00000559119 RAB9BQ9NP90 201 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 EXOC6BQ9Y2D4 811 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 TNRQ92752 1358 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 KIF15Q9NS87 1388 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 NPC1L1Q9UHC9 1359 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 FMN1Q68DA7 1419 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 ARHGAP35Q9NRY4 1499 aa2.82□□□□□ -1.96
VPS13C-208ENST00000559119 ARID1AO14497 2285 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 IGHV3-35A0A0C4DH35 117 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 PANO1I0J062 215 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 MAGEB4O15481 346 aaPredicted RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 IGLV1-47P01700 117 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 FYNP06241 537 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 FCGR3AP08637 254 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 CRKLP46109 303 aaKnown RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 TNK1Q13470 666 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 PRPF4BQ13523 1007 aaKnown RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 CEACAM7Q14002 265 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 TGIF1Q15583 401 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 KLHL40Q2TBA0 621 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 KRTAP5-7Q6L8G8 165 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 ZNF730Q6ZMV8 503 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 C11orf57Q6ZUT1 292 aaPredicted RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 TICAM2Q86XR7 235 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 ZNF491Q8N8L2 437 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 FAM122AQ96E09 287 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 IMMP1LQ96LU5 166 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 CCM2Q9BSQ5 444 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 ELL3Q9HB65 397 aaPredicted RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 ZNF446Q9NWS9 450 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 KLRF1Q9NZS2 232 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 ZNF319Q9P2F9 582 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 WDR35Q9P2L0 1181 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 SNX7Q9UNH6 387 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 ZFP37Q9Y6Q3 630 aaPredicted RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 BLMP54132 1417 aaPredicted RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 NAIPQ13075 1403 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 YEATS2Q9ULM3 1422 aa2.81□□□□□ -1.96
VPS13C-208ENST00000559119 VIRMAQ69YN4 1812 aaKnown RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 CFAP65Q6ZU64 1925 aaKnown RBP2.81□□□□□ -1.96
VPS13C-208ENST00000559119 CTTNBP2Q8WZ74 1663 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 PTPN23Q9H3S7 1636 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 UHRF1BP1LA0JNW5 1464 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 AQRO60306 1485 aaKnown RBP eCLIP2.8□□□□□ -1.96
VPS13C-208ENST00000559119 ANKRD30AQ9BXX3 1397 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 VGLL3A8MV65 326 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 PGLSO95336 258 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 PRAMEF12O95522 483 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 FHP07954 510 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 FOSL2P15408 326 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 P2RY4P51582 365 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 CBX1P83916 185 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 CETN1Q12798 172 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 ABRQ12979 859 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 KRT80Q6KB66 452 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 PPP1R21Q6ZMI0 780 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 GCNT7Q6ZNI0 430 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 PHLDB2Q86SQ0 1253 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 APOBEC3FQ8IUX4 373 aaKnown RBP2.8□□□□□ -1.96
VPS13C-208ENST00000559119 TMEM99Q8N816 258 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 ZNF671Q8TAW3 534 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 GPR148Q8TDV2 347 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 AFAP1L1Q8TED9 768 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 PIBF1Q8WXW3 757 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 RAD54LQ92698 747 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 PGAP3Q96FM1 320 aaPredicted RBP2.8□□□□□ -1.96
VPS13C-208ENST00000559119 CASD1Q96PB1 797 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 CTRCQ99895 268 aa2.8□□□□□ -1.96
VPS13C-208ENST00000559119 SPG21Q9NZD8 308 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms