RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 LARS2Q15031 903 aaKnown RBP11.75□□□□□ -0.53
LDLR-205ENST00000557933 CRTC2Q53ET0 693 aaPredicted RBP11.75□□□□□ -0.53
LDLR-205ENST00000557933 MTFR2Q6P444 385 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 LINC00299Q6ZSB3 139 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 DNAJB7Q7Z6W7 309 aaPredicted RBP11.75□□□□□ -0.53
LDLR-205ENST00000557933 NOXA1Q86UR1 476 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 OR2AP1Q8NGE2 309 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 OR52P1PQ8NH57 321 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PIK3R3Q92569 461 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 KLK6Q92876 244 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 PPCDCQ96CD2 204 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 TMED9Q9BVK6 235 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 VN1R3Q9BXE9 311 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 GALNT9Q9HCQ5 603 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 MAT2BQ9NZL9 334 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 HSPB11Q9Y547 144 aa11.75□□□□□ -0.53
LDLR-205ENST00000557933 FADS2P1A8MWK0 482 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 PLK4O00444 970 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 SERPIND1P05546 499 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 PEPDP12955 493 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 PTPN2P17706 415 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 IMPA1P29218 277 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 AVPR1BP47901 424 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 METAP1P53582 386 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 E2F2Q14209 437 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 TATDN3Q17R31 274 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 ASB18Q6ZVZ8 466 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 ZNF367Q7RTV3 350 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 SLC30A8Q8IWU4 369 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 OR7G1Q8NGA0 311 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 MRPS31Q92665 395 aaKnown RBP11.74□□□□□ -0.53
LDLR-205ENST00000557933 TMCO6Q96DC7 493 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 MTERF3Q96E29 417 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 CASD1Q96PB1 797 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 UCK2Q9BZX2 261 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 SLC6A16Q9GZN6 736 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 FTSJ1Q9UET6 329 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 TEKT2Q9UIF3 430 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 AP3M1Q9Y2T2 418 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 CACNA1CQ13936 2221 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 PLA2G10O15496 165 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 HPGDSO60760 199 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 IGSF6O95976 241 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 IFNW1P05000 195 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 GSTM1P09488 218 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 MSL3P1P0C860 447 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 CD72P21854 359 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 OLR1P78380 273 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 EFR3AQ14156 821 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 BTBD16Q32M84 506 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 SAXO2Q658L1 398 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 CASP12Q6UXS9 341 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 TMEM150AQ86TG1 271 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 PHC2Q8IXK0 858 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 FAM20CQ8IXL6 584 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 SLC38A6Q8IZM9 456 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 HORMAD2Q8N7B1 307 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 DENND6BQ8NEG7 585 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 OR5H6Q8NGV6 325 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 TM9SF4Q92544 642 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 LRR1Q96L50 414 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 GPA33Q99795 319 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 WACQ9BTA9 647 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 EGLN3Q9H6Z9 239 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 CXorf36Q9H7Y0 433 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 SLAMF7Q9NQ25 335 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 MIEF1Q9NQG6 463 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 PLCXD1Q9NUJ7 323 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 MCUBQ9NWR8 336 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 TXNL4BQ9NX01 149 aaKnown RBP11.74□□□□□ -0.53
LDLR-205ENST00000557933 CMAHPQ9Y471 501 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 YIPF1Q9Y548 306 aa11.74□□□□□ -0.53
LDLR-205ENST00000557933 HEPACAM2A8MVW5 462 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 TNFRSF10AO00220 468 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 PLOD3O60568 738 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 PSMA3P25788 255 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 HLA-FP30511 346 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 TIA1P31483 386 aaKnown RBP eCLIP11.73□□□□□ -0.531e-7■□□□□ 9.9
LDLR-205ENST00000557933 TIE1P35590 1138 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 XCR1P46094 333 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 MNX1P50219 401 aaPredicted RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 XKP51811 444 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 CTBP2P56545 445 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 TBPL1P62380 186 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 RBBP4Q09028 425 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.73□□□□□ -0.535e-6■□□□□ 10.9
LDLR-205ENST00000557933 FBXO43Q4G163 708 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 TPRG1Q6ZUI0 275 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 CHST9Q7L1S5 443 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.73□□□□□ -0.53
LDLR-205ENST00000557933 LAS2Q8IYD9 372 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SLC9A6Q92581 669 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 EXOSC8Q96B26 276 aaKnown RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 TMEM159Q96B96 161 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 NELL2Q99435 816 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 POLR2J3Q9H1A7 115 aaKnown RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 SUV39H2Q9H5I1 410 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 ELAC1Q9H777 363 aaKnown RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 BEX1Q9HBH7 125 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 C1GALT1Q9NS00 363 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms