RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 BRF2Q9HAW0 419 aa10.58□□□□□ -0.72
SHMT2-216ENST00000554975 OLAHQ9NV23 265 aa10.58□□□□□ -0.72
SHMT2-216ENST00000554975 FAM120CQ9NX05 1096 aaKnown RBP10.58□□□□□ -0.72
SHMT2-216ENST00000554975 ZNF639Q9UID6 485 aa10.58□□□□□ -0.72
SHMT2-216ENST00000554975 RNF11Q9Y3C5 154 aa10.58□□□□□ -0.72
SHMT2-216ENST00000554975 PRKAB1Q9Y478 270 aa10.58□□□□□ -0.72
SHMT2-216ENST00000554975 SPTBP11277 2137 aa10.58□□□□□ -0.72
SHMT2-216ENST00000554975 EVPLLA8MZ36 301 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 H3BNH8 94 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 BMP10O95393 424 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 EML2O95834 649 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 BCKDHAP12694 445 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 DDX5P17844 614 aaKnown RBP10.57□□□□□ -0.72
SHMT2-216ENST00000554975 GSTT1P30711 240 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 HPCAL1P37235 193 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 CAPGP40121 348 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 HALP42357 657 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 KIR3DL1P43629 444 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 RPS6KA3P51812 740 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 MERTKQ12866 999 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 CHAF1BQ13112 559 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 MYBPC3Q14896 1274 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 C18orf21Q32NC0 220 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-216ENST00000554975 CNPY1Q3B7I2 92 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 PTCHD3Q3KNS1 767 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 BCL7AQ4VC05 210 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 PYCR3Q53H96 274 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 SPIN4Q56A73 249 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 NHSL2Q5HYW2 709 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 GRHL2Q6ISB3 625 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 ABRAXAS1Q6UWZ7 409 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 GPR180Q86V85 440 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 EPHX4Q8IUS5 362 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 MICU2Q8IYU8 434 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 ESX1Q8N693 406 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 TRIML2Q8N7C3 387 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 GALNT6Q8NCL4 622 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 TSPAN14Q8NG11 270 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 GTF2H4Q92759 462 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 NCLNQ969V3 563 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 FAM162AQ96A26 154 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 FAM120BQ96EK7 910 aaKnown RBP10.57□□□□□ -0.72
SHMT2-216ENST00000554975 DTNBP1Q96EV8 351 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 DPYSL5Q9BPU6 564 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 CPPED1Q9BRF8 314 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-216ENST00000554975 ACPTQ9BZG2 426 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 OR2AG1Q9H205 316 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 TRIT1Q9H3H1 467 aaKnown RBP10.57□□□□□ -0.72
SHMT2-216ENST00000554975 RPF2Q9H7B2 306 aaKnown RBP10.57□□□□□ -0.72
SHMT2-216ENST00000554975 SIDT1Q9NXL6 827 aaKnown RBP10.57□□□□□ -0.72
SHMT2-216ENST00000554975 UBAP1Q9NZ09 502 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 KLHL3Q9UH77 587 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 BLOC1S6Q9UL45 172 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 PCDHGA11Q9Y5H2 935 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 PKDREJQ9NTG1 2253 aa10.57□□□□□ -0.72
SHMT2-216ENST00000554975 PCSK5Q92824 1860 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 TRBV5-3A0A0A0MS03 114 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 C7orf72A4D263 438 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 KLHL33A6NCF5 533 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 ZNF701M0R085 212 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 SOCS2O14508 198 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 EI24O14681 340 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 POLR1CO15160 346 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 CLOCKO15516 846 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 TPST1O60507 370 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 PRSS23O95084 383 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 PDYNP01213 254 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 MTHFD1P11586 935 aaKnown RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 ACP5P13686 325 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 HRH2P25021 359 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 ALDH3A2P51648 485 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 OR4D2P58180 307 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 MTPNP58546 118 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 GPLD1P80108 840 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 HMGCS1Q01581 520 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 ACSM2AQ08AH3 577 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 CHIT1Q13231 466 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 DAG1Q14118 895 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 PTGR1Q14914 329 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 CPSF6Q16630 551 aaKnown RBP eCLIP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 PLA2G4EQ3MJ16 856 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 RUNDC3AQ59EK9 446 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 PAGE2BQ5JRK9 111 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 SPANXN4Q5MJ08 99 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 FOXB2Q5VYV0 432 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 ACSM2BQ68CK6 577 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 TTC33Q6PID6 262 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 CRTC3Q6UUV7 619 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 B3GNT6Q6ZMB0 384 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 PATL1Q86TB9 770 aaKnown RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 SLC22A15Q8IZD6 547 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 DTWD1Q8N5C7 304 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 BEND7Q8N7W2 519 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 FAM47BQ8NA70 645 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 SLC37A2Q8TED4 501 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 UBE2E3Q969T4 207 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 SLC47A1Q96FL8 570 aa10.56□□□□□ -0.72
SHMT2-216ENST00000554975 SCARF2Q96GP6 870 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 REXO5Q96IC2 774 aaKnown RBP10.56□□□□□ -0.72
SHMT2-216ENST00000554975 VPS50Q96JG6 964 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms