RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 C6orf120Q7Z4R8 191 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 DSG4Q86SJ6 1040 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 NEUROD4Q9HD90 331 aa12.51□□□□□ -0.41
LDLR-203ENST00000535915 TRBV4-1A0A0J9YWV2 114 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 FFAR1O14842 300 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 EPHX1P07099 455 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 ERGP11308 486 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 CNR2P34972 360 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 CRISP1P54107 249 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 CDK3Q00526 305 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 DNASE1L3Q13609 305 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 ARHGAP19Q14CB8 494 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 MAPK11Q15759 364 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 FBXO43Q4G163 708 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 ARMCX4Q5H9R4 360 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 FAM78AQ5JUQ0 283 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 TMC5Q6UXY8 1006 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 ADAMTSL4Q6UY14 1074 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 ROGDIQ9GZN7 287 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 C6orf62Q9GZU0 229 aaPredicted RBP12.5□□□□□ -0.41
LDLR-203ENST00000535915 MMP27Q9H306 513 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 ANKHQ9HCJ1 492 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 A4GALTQ9NPC4 353 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 TAS2R16Q9NYV7 291 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 TMCC3Q9ULS5 477 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 IGLON5A6NGN9 336 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 ZAR1LA6NP61 321 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 CNOT3O75175 753 aaKnown RBP12.5□□□□□ -0.41
LDLR-203ENST00000535915 S100A1P23297 94 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 GRK5P34947 590 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 IL12RB1P42701 662 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 TP53BP2Q13625 1128 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 LEXMQ3ZCV2 418 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 METRNLQ641Q3 311 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 FRMPD2BQ6IN97 320 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 SZRD1Q7Z422 152 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 NUDT13Q86X67 352 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 SLC7A5P1Q8MH63 180 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 NATD1Q8N6N6 113 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 PSMA8Q8TAA3 256 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 DHRS1Q96LJ7 313 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 QRFPRQ96P65 431 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 OR51E2Q9H255 320 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 WASH6PQ9NQA3 447 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 CLN6Q9NWW5 311 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 FTSJ1Q9UET6 329 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 KCND3Q9UK17 655 aa12.5□□□□□ -0.41
LDLR-203ENST00000535915 ARRDC5A6NEK1 342 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 OR1F1O43749 312 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 MPZL2O60487 215 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 MFN2O95140 757 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 SERPIND1P05546 499 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 HSD17B2P37059 387 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 CLCNKAP51800 687 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 PPP5CP53041 499 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 CRISP3P54108 245 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 OLR1P78380 273 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 UBE3AQ05086 875 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 ZNF770Q6IQ21 691 aaPredicted RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 ADCK2Q7Z695 626 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 KIAA1958Q8N8K9 716 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 MINDY2Q8NBR6 621 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 GPR32P1Q8NGA4 272 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 VANGL1Q8TAA9 524 aaPredicted RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 SMPDL3AQ92484 453 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 CRELD1Q96HD1 420 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 TEX10Q9NXF1 929 aaPredicted RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 WBP11Q9Y2W2 641 aaKnown RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 SNX11Q9Y5W9 270 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 SNRNP200O75643 2136 aaKnown RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 A0A0G2JN53 185 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 LINC01553A4QN01 128 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 EFCAB10A6NFE3 127 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 METTL15A6NJ78 407 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 NDUFS4O43181 175 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 SLC35G4P0C7Q5 338 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 DDX5P17844 614 aaKnown RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 RGS6P49758 472 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 MED22Q15528 200 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 SOWAHCQ53LP3 525 aaPredicted RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 DEF8Q6ZN54 512 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 AMER2Q8N7J2 671 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 APOBEC4Q8WW27 367 aaKnown RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 BADQ92934 168 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 RAB7BQ96AH8 199 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 RGMAQ96B86 450 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 ZBED6CLQ96FA7 236 aaPredicted RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 CHCHD6Q9BRQ6 235 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 HDAC8Q9BY41 377 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 PCBD2Q9H0N5 130 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 RNF167Q9H6Y7 350 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 C11orf16Q9NQ32 467 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 LHX9Q9NQ69 397 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 PRSS16Q9NQE7 514 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 SIRT3Q9NTG7 399 aaPredicted RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 DPP7Q9UHL4 492 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 IFT52Q9Y366 437 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 RBMX2Q9Y388 322 aaKnown RBP12.49□□□□□ -0.41
LDLR-203ENST00000535915 ATG2BQ96BY7 2078 aa12.49□□□□□ -0.41
LDLR-203ENST00000535915 TRANK1O15050 2925 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms