RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 FAM169BQ8N8A8 192 aa7□□□□□ -1.29
CD44-228ENST00000528455 BMPERQ8N8U9 685 aa7□□□□□ -1.29
CD44-228ENST00000528455 ACOT4Q8N9L9 421 aa7□□□□□ -1.29
CD44-228ENST00000528455 RCBTB1Q8NDN9 531 aa7□□□□□ -1.29
CD44-228ENST00000528455 C7orf57Q8NEG2 295 aa7□□□□□ -1.29
CD44-228ENST00000528455 TM4SF18Q96CE8 201 aa7□□□□□ -1.29
CD44-228ENST00000528455 MTERF3Q96E29 417 aa7□□□□□ -1.29
CD44-228ENST00000528455 LIN37Q96GY3 246 aaPredicted RBP7□□□□□ -1.29
CD44-228ENST00000528455 DEPDC7Q96QD5 511 aa7□□□□□ -1.29
CD44-228ENST00000528455 OR6C1Q96RD1 312 aa7□□□□□ -1.29
CD44-228ENST00000528455 SERINC2Q96SA4 455 aa7□□□□□ -1.29
CD44-228ENST00000528455 ZPBPQ9BS86 351 aa7□□□□□ -1.29
CD44-228ENST00000528455 NDC1Q9BTX1 674 aa7□□□□□ -1.29
CD44-228ENST00000528455 TUBB6Q9BUF5 446 aa7□□□□□ -1.29
CD44-228ENST00000528455 ZNF717Q9BY31 904 aaPredicted RBP7□□□□□ -1.29
CD44-228ENST00000528455 MRPL1Q9BYD6 325 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 ASPSCR1Q9BZE9 553 aa7□□□□□ -1.29
CD44-228ENST00000528455 BRINP2Q9C0B6 783 aa7□□□□□ -1.29
CD44-228ENST00000528455 AICDAQ9GZX7 198 aa7□□□□□ -1.29
CD44-228ENST00000528455 MYLK2Q9H1R3 596 aa7□□□□□ -1.29
CD44-228ENST00000528455 SYNPO2LQ9H987 977 aa7□□□□□ -1.29
CD44-228ENST00000528455 SAR1AQ9NR31 198 aa7□□□□□ -1.29
CD44-228ENST00000528455 SDR39U1Q9NRG7 319 aaPredicted RBP7□□□□□ -1.29
CD44-228ENST00000528455 SIDT1Q9NXL6 827 aaKnown RBP7□□□□□ -1.29
CD44-228ENST00000528455 RARRES3Q9UL19 164 aa7□□□□□ -1.29
CD44-228ENST00000528455 CLCA2Q9UQC9 943 aa7□□□□□ -1.29
CD44-228ENST00000528455 SEC16AO15027 2179 aa7□□□□□ -1.29
CD44-228ENST00000528455 LAMA5O15230 3695 aa7□□□□□ -1.29
CD44-228ENST00000528455 COL27A1Q8IZC6 1860 aaPredicted RBP7□□□□□ -1.29
CD44-228ENST00000528455 ACACAQ13085 2346 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 A0A0A6YYD5 115 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 GNG14A0A1W2PPG7 69 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 DYTNA2CJ06 578 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 EFCAB7A8K855 629 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 TMEM150CB9EJG8 249 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 TAF4O00268 1085 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 SAP18O00422 153 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 ANKRD28O15084 1053 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 ERI3O43414 337 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 PROM1O43490 865 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 FOXS1O43638 330 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 B3GALT2O43825 422 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 GALR3O60755 368 aaPredicted RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 SLC22A3O75751 556 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 KLHL18O94889 574 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 NSA2O95478 260 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 ALDOCP09972 364 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 ZNF888P0CJ79 500 aaPredicted RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 PIM1P11309 404 aaPredicted RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 G6PDP11413 515 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 DDX5P17844 614 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 PRPS1L1P21108 318 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 IL10P22301 178 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 GPX3P22352 226 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 TPP2P29144 1249 aaPredicted RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 TIA1P31483 386 aaKnown RBP eCLIP6.99□□□□□ -1.29
CD44-228ENST00000528455 RPL3P39023 403 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 AVPR1BP47901 424 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 PLA2G16P53816 162 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 DIO3P55073 304 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 C21orf58P58505 322 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 RAB8AP61006 207 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 BTN3A2P78410 334 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 SF3A3Q12874 501 aaKnown RBP eCLIP6.99□□□□□ -1.29
CD44-228ENST00000528455 TARDBPQ13148 414 aaKnown RBP eCLIP6.99□□□□□ -1.29
CD44-228ENST00000528455 SLAMF1Q13291 335 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 BIKQ13323 160 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 KCNAB1Q14722 419 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 C16orf72Q14CZ0 275 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 HEPACAMQ14CZ8 416 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 GPR19Q15760 415 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 PDCD4Q53EL6 469 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 HES3Q5TGS1 186 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 FAM91A1Q658Y4 838 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 RHBDD2Q6NTF9 364 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 PRMT9Q6P2P2 845 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 CYP20A1Q6UW02 462 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 C6orf89Q6UWU4 347 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 RAB11FIP2Q7L804 512 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 CLNKQ7Z7G1 428 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 B3GNT8Q7Z7M8 397 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 GPR180Q86V85 440 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 NUDT13Q86X67 352 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 PPP1R3BQ86XI6 285 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 MARCH9Q86YJ5 346 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 RIMKLAQ8IXN7 391 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 MIER2Q8N344 545 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 TTC29Q8NA56 475 aaPredicted RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 GLB1L3Q8NCI6 653 aaPredicted RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 OR1L3Q8NH93 324 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 PROKR1Q8TCW9 393 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 NXPE2Q96DL1 559 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 COX4I2Q96KJ9 171 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 TEFMQ96QE5 360 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 TAAR9Q96RI9 348 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 PRPF18Q99633 342 aaKnown RBP6.99□□□□□ -1.29
CD44-228ENST00000528455 MACROD1Q9BQ69 325 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 C17orf62Q9BQA9 187 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 CCDC106Q9BWC9 280 aa6.99□□□□□ -1.29
CD44-228ENST00000528455 ZNF385DQ9H6B1 395 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms